2024-03-28 22:40:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001301585 1929 bp mRNA linear PLN 30-JUN-2020 DEFINITION Zea mays WUSCHEL-related homeobox 7-like (LOC103636156), mRNA. ACCESSION NM_001301585 XM_008658507 VERSION NM_001301585.1 KEYWORDS RefSeq. SOURCE Zea mays ORGANISM Zea mays Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea. REFERENCE 1 (bases 1 to 1929) AUTHORS Nardmann J, Zimmermann R, Durantini D, Kranz E and Werr W. TITLE WOX gene phylogeny in Poaceae: a comparative approach addressing leaf and embryo development JOURNAL Mol. Biol. Evol. 24 (11), 2474-2484 (2007) PUBMED 17768306 REFERENCE 2 (bases 1 to 1929) AUTHORS Nardmann J and Werr W. TITLE The shoot stem cell niche in angiosperms: expression patterns of WUS orthologues in rice and maize imply major modifications in the course of mono- and dicot evolution JOURNAL Mol. Biol. Evol. 23 (12), 2492-2504 (2006) PUBMED 16987950 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BT055794.1. On Aug 21, 2014 this sequence version replaced XM_008658507.1. ##Evidence-Data-START## Transcript exon combination :: BT055794.1, AM490240.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780172, SAMN08026695 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1929 /organism="Zea mays" /mol_type="mRNA" /db_xref="taxon:4577" /chromosome="8" /map="8" gene 1..1929 /gene="LOC103636156" /gene_synonym="GRMZM2G133972; wox9A; wox9b" /note="WUSCHEL-related homeobox 7-like" /db_xref="GeneID:103636156" exon 1..377 /gene="LOC103636156" /gene_synonym="GRMZM2G133972; wox9A; wox9b" /inference="alignment:Splign:2.1.0" misc_feature 143..145 /gene="LOC103636156" /gene_synonym="GRMZM2G133972; wox9A; wox9b" /note="upstream in-frame stop codon" CDS 191..1735 /gene="LOC103636156" /gene_synonym="GRMZM2G133972; wox9A; wox9b" /note="putative homeobox DNA-binding domain superfamily protein; pWOX9B; dd9B; WUSCHEL related homeobox 9b; putative wuschel homeobox protein; WUSCHEL related homeobox 9a" /codon_start=1 /product="WUSCHEL-related homeobox 7-like" /protein_id="NP_001288514.1" /db_xref="GeneID:103636156" /translation="
MASSFNNKTSHWPSMFRSKHAAEPWQAQPDISSSPPSLLSGGGSSSTTTIGRCLKHPLSGYSGGEERTPDPKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMRLQEYGQVGDANVFYWFQNRKSRSKNKQRTGQLGLGLARAPGCGAAAPPVTPQPLIQNQFQVLASPAQAPASSSSSSSDRSSGSSKPAPQPMSATAAAMNFPGPLGAACAQMYYQAHPVAPVSALPAHKVQDPVASDEPVFQPWLQGYFLSAAEVASILGGQYRHDVPVQQQPPATLPAGAFLGLYNEVTEPTVTGHRTCAWGPAGLGQFWPVGGADHHQHHKHNTTAATNTVARDAAHEHATTLGLLQYGFEASAAMETASAAVPLAASPGTAASVATAGLTSLPASTNAVVVNYDLLQGLAVPGSGSGAVGVSTGGAPPVAVAAAPTAAQEGVVVALCITDSVTGKSVAHNVAAARLDVRAQFGEAAVLLRAVGDRGGLDLVPVPVDALGCTVEPLQHGAFYYVLV"
misc_feature order(401..415,419..421,473..475,491..493,542..544, 548..553,560..565,569..577,581..586) /gene="LOC103636156" /gene_synonym="GRMZM2G133972; wox9A; wox9b" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 407..583 /gene="LOC103636156" /gene_synonym="GRMZM2G133972; wox9A; wox9b" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cl00084" /db_xref="CDD:444687" misc_feature order(407..409,416..418,551..553,560..565,572..574) /gene="LOC103636156" /gene_synonym="GRMZM2G133972; wox9A; wox9b" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 378..1409 /gene="LOC103636156" /gene_synonym="GRMZM2G133972; wox9A; wox9b" /inference="alignment:Splign:2.1.0" exon 1410..1929 /gene="LOC103636156" /gene_synonym="GRMZM2G133972; wox9A; wox9b" /inference="alignment:Splign:2.1.0" ORIGIN
gtgtagtgtagcgacaaggtgcgacagcagggcagctagggagctcactgatcttcctactgttaattcctccgatcttctcagccgctgttctagagtgtcgtcgtgagctcactctcacaataaggagaagatctggtgctgagaaaggggggcaacgagaggagagaagaaagataatcggctcggcatggcctcctccttcaacaacaaaaccagtcactggccgagcatgtttaggtccaagcacgccgctgagccgtggcaggcgcagcctgacatcagcagctcgccgccgtcgctcctctcaggtggcggctctagcagcaccaccaccatcggccgctgcctcaagcaccccctctcaggttactcaggtggcgaggagcggaccccggatccgaagccccggtggaaccccaggccggagcagatccggattctggaggccatcttcaactccggcatggtcaacccgccgcgcgacgagatcccccgcatccgcatgcgcctgcaggagtacggccaggtcggcgacgccaacgtcttctactggttccagaaccgcaagtcccgctccaagaacaagcagcgcaccggacagctggggctgggccttgcgcgcgcgccgggttgcggggccgctgcgccgcccgtcacgccgcagcccttgatccagaaccaattccaggtgctcgcctcgcccgcgcaggcgccagcttcctcgtcctcgtcctcctccgaccgctcctctgggtccagcaagccggcgccgcagccgatgtccgcgacggcagcggccatgaactttccagggccgctcggcgcggcgtgtgcgcagatgtactaccaagcccaccccgtggcgccggtctcggcgttgccagcgcacaaggtgcaggaccctgtagcctccgacgagcccgtcttccagccgtggctacaaggctacttcctgtcggctgccgaggtcgccagcattctcgggggccagtacaggcacgacgtgcccgtgcagcagcagccaccggcgacgttgcctgcgggagcgttcttggggctgtacaacgaggtgacagagccgactgtcactggtcacaggacatgcgcctggggcccggcggggctcgggcagttctggcccgtgggcggcgctgatcaccatcagcaccacaagcacaataccaccgcggcgaccaacaccgtagcaagggacgcggcgcacgagcacgccacgacgctggggttgctgcagtacggcttcgaagctagcgcggccatggagacggcttccgcggcggtgccccttgctgcgtcgccgggaaccgctgcgagcgtggcgacggctgggctcacatctttgcctgcaagtactaatgctgttgtcgtcaactatgatctgctgcaaggactggcagtgcccgggtccgggtccggggccgtcggtgtcagcaccggcggtgcaccgcctgtcgccgttgccgcggcgcccacggcagcgcaggagggcgtcgtcgtagcactgtgcatcacggacagcgtcacgggcaagagcgtggcacacaacgtcgcggctgccaggctcgacgtgagggcgcagttcggcgaggcggccgttctgctccgcgccgtcggcgaccgcggcgggctcgacctcgtgcccgtccccgtcgacgcgttgggctgcacagtggagccgctccagcacggtgccttttactacgtgctggtataacaaattgagcgtacgtgacgcgtgaagaaagctagagttcccggtgtgctgcgcgaaagcgcggatggcgtacgtaggtgttgtgtgccgatttattaagtcctggtttaatttgtctcgtatattatgtatgcttgattgcttgcacagttgcactgaagtgcactaagaacgtaagaactatatcgtattgc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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