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2024-03-28 22:40:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001301585            1929 bp    mRNA    linear   PLN 30-JUN-2020
DEFINITION  Zea mays WUSCHEL-related homeobox 7-like (LOC103636156), mRNA.
ACCESSION   NM_001301585 XM_008658507
VERSION     NM_001301585.1
KEYWORDS    RefSeq.
SOURCE      Zea mays
  ORGANISM  Zea mays
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD
            clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae;
            Zea.
REFERENCE   1  (bases 1 to 1929)
  AUTHORS   Nardmann J, Zimmermann R, Durantini D, Kranz E and Werr W.
  TITLE     WOX gene phylogeny in Poaceae: a comparative approach addressing
            leaf and embryo development
  JOURNAL   Mol. Biol. Evol. 24 (11), 2474-2484 (2007)
   PUBMED   17768306
REFERENCE   2  (bases 1 to 1929)
  AUTHORS   Nardmann J and Werr W.
  TITLE     The shoot stem cell niche in angiosperms: expression patterns of
            WUS orthologues in rice and maize imply major modifications in the
            course of mono- and dicot evolution
  JOURNAL   Mol. Biol. Evol. 23 (12), 2492-2504 (2006)
   PUBMED   16987950
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BT055794.1.
            
            On Aug 21, 2014 this sequence version replaced XM_008658507.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BT055794.1, AM490240.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00780172, SAMN08026695
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1929
                     /organism="Zea mays"
                     /mol_type="mRNA"
                     /db_xref="taxon:4577"
                     /chromosome="8"
                     /map="8"
     gene            1..1929
                     /gene="LOC103636156"
                     /gene_synonym="GRMZM2G133972; wox9A; wox9b"
                     /note="WUSCHEL-related homeobox 7-like"
                     /db_xref="GeneID:103636156"
     exon            1..377
                     /gene="LOC103636156"
                     /gene_synonym="GRMZM2G133972; wox9A; wox9b"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    143..145
                     /gene="LOC103636156"
                     /gene_synonym="GRMZM2G133972; wox9A; wox9b"
                     /note="upstream in-frame stop codon"
     CDS             191..1735
                     /gene="LOC103636156"
                     /gene_synonym="GRMZM2G133972; wox9A; wox9b"
                     /note="putative homeobox DNA-binding domain superfamily
                     protein; pWOX9B; dd9B; WUSCHEL related homeobox 9b;
                     putative wuschel homeobox protein; WUSCHEL related
                     homeobox 9a"
                     /codon_start=1
                     /product="WUSCHEL-related homeobox 7-like"
                     /protein_id="NP_001288514.1"
                     /db_xref="GeneID:103636156"
                     /translation="
MASSFNNKTSHWPSMFRSKHAAEPWQAQPDISSSPPSLLSGGGSSSTTTIGRCLKHPLSGYSGGEERTPDPKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMRLQEYGQVGDANVFYWFQNRKSRSKNKQRTGQLGLGLARAPGCGAAAPPVTPQPLIQNQFQVLASPAQAPASSSSSSSDRSSGSSKPAPQPMSATAAAMNFPGPLGAACAQMYYQAHPVAPVSALPAHKVQDPVASDEPVFQPWLQGYFLSAAEVASILGGQYRHDVPVQQQPPATLPAGAFLGLYNEVTEPTVTGHRTCAWGPAGLGQFWPVGGADHHQHHKHNTTAATNTVARDAAHEHATTLGLLQYGFEASAAMETASAAVPLAASPGTAASVATAGLTSLPASTNAVVVNYDLLQGLAVPGSGSGAVGVSTGGAPPVAVAAAPTAAQEGVVVALCITDSVTGKSVAHNVAAARLDVRAQFGEAAVLLRAVGDRGGLDLVPVPVDALGCTVEPLQHGAFYYVLV"
     misc_feature    order(401..415,419..421,473..475,491..493,542..544,
                     548..553,560..565,569..577,581..586)
                     /gene="LOC103636156"
                     /gene_synonym="GRMZM2G133972; wox9A; wox9b"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    407..583
                     /gene="LOC103636156"
                     /gene_synonym="GRMZM2G133972; wox9A; wox9b"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cl00084"
                     /db_xref="CDD:444687"
     misc_feature    order(407..409,416..418,551..553,560..565,572..574)
                     /gene="LOC103636156"
                     /gene_synonym="GRMZM2G133972; wox9A; wox9b"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            378..1409
                     /gene="LOC103636156"
                     /gene_synonym="GRMZM2G133972; wox9A; wox9b"
                     /inference="alignment:Splign:2.1.0"
     exon            1410..1929
                     /gene="LOC103636156"
                     /gene_synonym="GRMZM2G133972; wox9A; wox9b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
gtgtagtgtagcgacaaggtgcgacagcagggcagctagggagctcactgatcttcctactgttaattcctccgatcttctcagccgctgttctagagtgtcgtcgtgagctcactctcacaataaggagaagatctggtgctgagaaaggggggcaacgagaggagagaagaaagataatcggctcggcatggcctcctccttcaacaacaaaaccagtcactggccgagcatgtttaggtccaagcacgccgctgagccgtggcaggcgcagcctgacatcagcagctcgccgccgtcgctcctctcaggtggcggctctagcagcaccaccaccatcggccgctgcctcaagcaccccctctcaggttactcaggtggcgaggagcggaccccggatccgaagccccggtggaaccccaggccggagcagatccggattctggaggccatcttcaactccggcatggtcaacccgccgcgcgacgagatcccccgcatccgcatgcgcctgcaggagtacggccaggtcggcgacgccaacgtcttctactggttccagaaccgcaagtcccgctccaagaacaagcagcgcaccggacagctggggctgggccttgcgcgcgcgccgggttgcggggccgctgcgccgcccgtcacgccgcagcccttgatccagaaccaattccaggtgctcgcctcgcccgcgcaggcgccagcttcctcgtcctcgtcctcctccgaccgctcctctgggtccagcaagccggcgccgcagccgatgtccgcgacggcagcggccatgaactttccagggccgctcggcgcggcgtgtgcgcagatgtactaccaagcccaccccgtggcgccggtctcggcgttgccagcgcacaaggtgcaggaccctgtagcctccgacgagcccgtcttccagccgtggctacaaggctacttcctgtcggctgccgaggtcgccagcattctcgggggccagtacaggcacgacgtgcccgtgcagcagcagccaccggcgacgttgcctgcgggagcgttcttggggctgtacaacgaggtgacagagccgactgtcactggtcacaggacatgcgcctggggcccggcggggctcgggcagttctggcccgtgggcggcgctgatcaccatcagcaccacaagcacaataccaccgcggcgaccaacaccgtagcaagggacgcggcgcacgagcacgccacgacgctggggttgctgcagtacggcttcgaagctagcgcggccatggagacggcttccgcggcggtgccccttgctgcgtcgccgggaaccgctgcgagcgtggcgacggctgggctcacatctttgcctgcaagtactaatgctgttgtcgtcaactatgatctgctgcaaggactggcagtgcccgggtccgggtccggggccgtcggtgtcagcaccggcggtgcaccgcctgtcgccgttgccgcggcgcccacggcagcgcaggagggcgtcgtcgtagcactgtgcatcacggacagcgtcacgggcaagagcgtggcacacaacgtcgcggctgccaggctcgacgtgagggcgcagttcggcgaggcggccgttctgctccgcgccgtcggcgaccgcggcgggctcgacctcgtgcccgtccccgtcgacgcgttgggctgcacagtggagccgctccagcacggtgccttttactacgtgctggtataacaaattgagcgtacgtgacgcgtgaagaaagctagagttcccggtgtgctgcgcgaaagcgcggatggcgtacgtaggtgttgtgtgccgatttattaagtcctggtttaatttgtctcgtatattatgtatgcttgattgcttgcacagttgcactgaagtgcactaagaacgtaagaactatatcgtattgc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]