2024-05-02 23:40:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001279306 3473 bp mRNA linear PLN 08-DEC-2016 DEFINITION Solanum lycopersicum argonaute 2A (AGO2A), mRNA. ACCESSION NM_001279306 XM_004233163 VERSION NM_001279306.2 KEYWORDS RefSeq. SOURCE Solanum lycopersicum (Lycopersicon esculentum) ORGANISM Solanum lycopersicum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JX493012.1. On Apr 12, 2015 this sequence version replaced NM_001279306.1. ##Evidence-Data-START## Transcript exon combination :: JX467706.1, JX493012.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA4079219, SAMEA4079221 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-3473 JX493012.1 32-3504 FEATURES Location/Qualifiers source 1..3473 /organism="Solanum lycopersicum" /mol_type="mRNA" /db_xref="taxon:4081" /chromosome="2" /map="2" gene 1..3473 /gene="AGO2A" /gene_synonym="AGO2A2" /note="argonaute 2A" /db_xref="GeneID:101249141" CDS 18..3146 /gene="AGO2A" /gene_synonym="AGO2A2" /codon_start=1 /product="argonaute 2A" /protein_id="NP_001266235.2" /db_xref="GeneID:101249141" /translation="
MDRGNYRRGGGHDNAGRGGGNRGRGQGRGGGRGEPQIGGGRGGTHIGGGSQMGQPPQQWGNQPRGSGQYQIRGGAPQNQPGQNYPVNQNPGRGGTWVNQPVQRGGGGGGSAWPRPQQQGSGVPNTTWPRPPPQQQGSGSGVANAWARPPPQRSQQHGGGNQQQVVDRSPPQSSDPVQVDLGSLKITDQSPSSRQESSKEKRVPIARPDTGKIAVKSIALLANHFPVRFNPQSTIMHYDVDIQQRADGNRPVKKLTNKSVLHMIREKLCADDPTRFPLDKTAYDGKKNIFSAVQLPTGCFAVNWSDGEDARLRSYDITIKLVAELKLCKLKEYLSGSLSHIPRDILQGMELVMKENPTRCRTSVGRCFYSNEHLPDHDFRFGVAAYRGFQQSLKPTKGGLALCLDYSVLALRKPMPVLDFLKEYLGESNENTFRNNIRAAKGALVGLKVRVIHRRTSQKFLIKQLTDCKTREITFPLEDPEGINPPRDVLLVDYFRDKYQREIQFKDFPSLDIGKGNKKNYVPMEFCVLVEGQRYPKEDLDKDTALFLKNISLARPQDRRQAICEMVRAGDGPCGAVTRNFDIGVDRNMTRVPGRILPPPDLKLGGQNRLPVNDKCQWNLVGKSVVEGKALQRWALIDFSAQDRKPFFRLRVDEFVFRLKDRCRKLSINMEEPAVVHFTDMHVLSEVGKVHKLLDGVVNAAKREINGKLQMIVCVMTSKHNGYKYLKWVSETQIGVVTQCCLSTNANKGQDQYLANLCMKINAKLGGSNMELMDRLPNFGREDNVMFIGADVNHPAAKNVTCPSIAAVVATVNWPAANRYAARVCPQVHRTEKILEFGKMCADLVHTYKEINSVKPNKIVVFRDGVSEGQFDMVLNEELLDLAKAIYDSNYQPAITLVVAQKRHHTRLFPEGGPANVPPGTVVDTIIVHPSDFDFYLCSHFGGLGTSKPTHYHVLWDDNGFNSDSLQKLIYNMCFTFARCTKPVSLVPPVYYADLVAYRGRMFQEVLMEMNSPSSATSSSPTASFQQKFYDLHSDLQNVMFFV"
misc_feature <168..>470 /gene="AGO2A" /gene_synonym="AGO2A2" /note="ARC105 or Med15 subunit of Mediator complex non-fungal; Region: Med15; pfam09606" /db_xref="CDD:312941" misc_feature 840..1073 /gene="AGO2A" /gene_synonym="AGO2A2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1101..1253 /gene="AGO2A" /gene_synonym="AGO2A2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1254..1604 /gene="AGO2A" /gene_synonym="AGO2A2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1392..1394,1437..1439,1485..1487,1497..1499, 1551..1553,1572..1574,1578..1580) /gene="AGO2A" /gene_synonym="AGO2A2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1749..3023 /gene="AGO2A" /gene_synonym="AGO2A2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2181..2183,2193..2195,2229..2240,2247..2249, 2271..2273,2280..2282,2292..2294,2304..2306) /gene="AGO2A" /gene_synonym="AGO2A2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2385..2387,2391..2393,2604..2606,2994..2996) /gene="AGO2A" /gene_synonym="AGO2A2" /note="active site" /db_xref="CDD:240015" ORIGIN
ctctctcaagttacagaatggatcgtgggaactaccgacgtggtggcggtcatgataacgccggcagaggtggaggtaaccgtggtcgaggacaaggccgtggtggtggaaggggtgagcctcagatcggaggtggaaggggtgggacccacatcggtggtgggtcccaaatgggtcagcctccacagcaatgggggaatcagccgaggggatcgggtcaataccagattcgtggtggggctccgcaaaatcaaccgggtcaaaactatccggttaatcagaatccgggtcgtggtggtacttgggtaaaccaaccggttcaacgtggtggtggtggtgggggtagcgcttggccacggccacaacagcagggtagtggcgttccaaacactacttggccccgaccaccaccgcagcaacagggtagtggtagtggagttgctaatgcttgggcccggccaccgccgcagaggagtcagcagcatggtggtggaaatcagcagcaggttgtggatcgttctcctcctcaatcttctgatcctgttcaagttgatctggggtccctgaaaattacagatcagagtccatcatctcgacaagaaagttccaaggaaaaacgtgtacctattgcacgacctgatactggaaaaattgctgtcaagtcaattgcgctgcttgctaatcattttcctgttagatttaatccccagtctaccattatgcattatgatgtggatattcaacagagggctgatgggaatcggcctgtgaagaagctaacaaacaagtctgttctccatatgataagagaaaagctgtgtgcggatgaccctacacgatttcccctagataaaactgcatatgacggtaagaagaacattttcagtgctgttcaacttcctactgggtgttttgctgtgaactggtctgacggggaagatgctaggttacgctcttatgacattaccatcaagcttgttgctgaattaaaactttgcaagttgaaagaatatttgagtggaagcctatcacatattcctcgtgatatactacaaggaatggagttggttatgaaagaaaatcctactaggtgcaggacttctgtaggtcgttgtttctactctaatgagcacctgcccgaccatgactttcgttttggtgttgctgcatatagaggttttcaacagagcctaaagcctacaaaaggagggcttgcgttgtgcttagattactcggtcttggcactccggaaaccaatgccagtgctagactttctgaaggaatatttaggagaatctaacgaaaataccttcaggaacaacattcgagctgcaaagggtgcattggttggtttgaaagtcagggtaattcatcgtcgtacaagccagaagtttcttattaagcagctaactgactgcaagactcgtgaaattacttttccccttgaagatcccgaaggcataaatcccccgagggatgttcttcttgttgactacttcagggataaatatcagcgcgagattcagttcaaggattttccttcattagatattggaaaaggtaataagaaaaactatgtcccgatggaattctgtgtcttggttgagggacaacggtatcccaaggaggatttggataaagatactgccttgtttctgaagaacatatcactagctcgaccccaagatagaaggcaggcaatttgtgaaatggtacgggctggagatgggccgtgcggggctgtcacccgcaattttgatattggagttgataggaacatgacccgtgttccgggtcgtattcttcctccccctgatttgaagctaggcggtcaaaatcgacttcctgtgaatgataaatgccagtggaaccttgttgggaaatctgtggtggaaggcaaggcgcttcagcgatgggctttgatagattttagcgctcaggatcgcaaacccttctttaggctacgagttgatgaatttgtcttcagattgaaagatcggtgcagaaaattgagtattaatatggaagaacctgctgtagtacatttcactgacatgcatgtactctctgaagttggcaaggttcataaacttctcgatggtgtggttaatgcagctaaacgggaaatcaatggtaaacttcaaatgatagtttgtgttatgacatcaaagcataatgggtacaaatatcttaaatgggtatctgagacacaaattggcgtagtaacccagtgttgcttgtctactaatgccaacaagggacaggatcaatatcttgcaaacctgtgtatgaagatcaatgcaaaacttgggggcagcaatatggaacttatggatagactccctaattttggaagagaagacaatgtcatgttcattggagctgatgttaatcatcctgctgcaaagaatgtgacatgtccatccatagcagccgttgttgccaccgtcaactggccagctgctaatagatatgctgctagagtttgtcctcaggttcacaggactgagaagattctagagtttggaaagatgtgtgcagacctagttcatacttataaggaaatcaactctgttaaaccaaacaaaattgttgttttccgtgatggtgtgagtgagggtcagtttgatatggtactcaacgaagagttgcttgatttggcgaaggctatatacgacagtaactatcaaccagcaattactcttgttgtggctcagaagagacaccatacacggctatttcctgagggtggccctgccaatgtgcctcctggtactgttgtggatacaataattgttcatccctctgattttgacttctatctttgcagccactttggagggttgggtaccagcaagccaactcactatcatgttctatgggatgataatggtttcaattctgacagcttacaaaagcttatatacaacatgtgtttcacttttgcgcggtgcactaaacctgtctcacttgttccaccagtttactatgcagaccttgttgcttataggggacggatgtttcaagaggtgcttatggagatgaactctcctagctctgcaacttcatcttctccaactgcctcatttcaacaaaaattttatgatttgcactctgatttgcagaacgtaatgtttttcgtctgatgccaccttgttgatctccttcaccattcccacactggggagggagatacggttgtctacattttggagatgcccatttccaaacgcatttgaacctcctttccgttggacattgcaaaggagtttgtgcgtgaatctaatggggtttcatgcttcttttacttttctattgtgtgagtttaatcattgacgtttgattgtgttttatctgctttggggggtctctggaggccactcccaaatatgtctactgcttaaattgtgtgatgttttgtattatgtatttctgagacgtgtcttaatattaatatatttgtgtttgagcta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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