2024-04-20 11:59:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001244539 1237 bp mRNA linear MAM 14-JAN-2021 DEFINITION Sus scrofa claudin 1 (CLDN1), mRNA. ACCESSION NM_001244539 XM_003358749 VERSION NM_001244539.1 KEYWORDS RefSeq. SOURCE Sus scrofa (pig) ORGANISM Sus scrofa Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus. REFERENCE 1 (bases 1 to 1237) AUTHORS Amoozadeh Y, Dan Q, Anwer S, Huang HH, Barbieri V, Waheed F, Maishan M and Szaszi K. TITLE Tumor Necrosis Factor-alpha Increases Claudin-1, 4, and 7 Expression in Tubular Cells: Role in Permeability Changes JOURNAL J Cell Physiol 232 (8), 2210-2220 (2017) PUBMED 27966776 REMARK GeneRIF: Tumor necrosis factor-alpha increases claudin-1, 4, and 7 expression in renal tubular cells, altering permeability and transepithelial electrical resistance. REFERENCE 2 (bases 1 to 1237) AUTHORS Uenishi H, Eguchi-Ogawa T, Shinkai H, Okumura N, Suzuki K, Toki D, Hamasima N and Awata T. TITLE PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences JOURNAL Nucleic Acids Res 35 (Database issue), D650-D653 (2007) PUBMED 17145712 REFERENCE 3 (bases 1 to 1237) AUTHORS Uenishi H, Eguchi T, Suzuki K, Sawazaki T, Toki D, Shinkai H, Okumura N, Hamasima N and Awata T. TITLE PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries JOURNAL Nucleic Acids Res 32 (Database issue), D484-D488 (2004) PUBMED 14681463 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK343301.1. On Sep 18, 2011 this sequence version replaced XM_003358749.1. ##Evidence-Data-START## Transcript exon combination :: AK343301.1, CN158684.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1969400, SAMEA1969720 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1237 AK343301.1 1-1237 FEATURES Location/Qualifiers source 1..1237 /organism="Sus scrofa" /mol_type="mRNA" /db_xref="taxon:9823" /chromosome="13" /map="13" gene 1..1237 /gene="CLDN1" /gene_synonym="claudin1" /note="claudin 1" /db_xref="GeneID:100625166" /db_xref="VGNC:VGNC:103926" exon 1..450 /gene="CLDN1" /gene_synonym="claudin1" /inference="alignment:Splign:2.1.0" misc_feature 216..218 /gene="CLDN1" /gene_synonym="claudin1" /note="upstream in-frame stop codon" CDS 228..863 /gene="CLDN1" /gene_synonym="claudin1" /note="claudin-1 protein" /codon_start=1 /product="claudin-1" /protein_id="NP_001231468.1" /db_xref="GeneID:100625166" /db_xref="VGNC:VGNC:103926" /translation="
MANAGLQLLGFILAFLGWIGSIVSTALPQWKIYSYAGDNIVTAQAIYEGLWMSCVSQSTGQIQCKVFDSLLNLNTTLQATRALMVIGILLGLIAIFVATVGMKCMKCMEDDEVQKMRMAVIGGVIFLISGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPSPSSGKDYV"
misc_feature 240..746 /gene="CLDN1" /gene_synonym="claudin1" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; pfam00822" /db_xref="CDD:395662" exon 451..615 /gene="CLDN1" /gene_synonym="claudin1" /inference="alignment:Splign:2.1.0" exon 616..700 /gene="CLDN1" /gene_synonym="claudin1" /inference="alignment:Splign:2.1.0" exon 701..1237 /gene="CLDN1" /gene_synonym="claudin1" /inference="alignment:Splign:2.1.0" ORIGIN
gtggctccgcgtctcagtcccgacccgggagcagcagcagcagcttcttgcttctcaacttcagcgcccacccggccttagacctgcacccctcgcatctccagctgcggcgcagggagccgagctccgcgcagtaacttcctccgcgcggctcctccacccccgggagtcccgggtgcgcacctgcaaactccgccttgtgcacctgcggcccttgagccagagctatggccaacgcggggctgcagctgctgggcttcatcctggccttcctgggctggatcggctccatcgtcagcaccgcactgcctcagtggaagatttactcctacgctggtgacaacattgtgacggcccaggccatctacgaggggctgtggatgtcctgcgtgtcgcagagcaccgggcagatccagtgcaaagtcttcgactccttgctgaatctgaacaccactttgcaagcaacccgtgccttgatggtaattggcatcctgctgggactaatagccatctttgtggccactgttggcatgaagtgtatgaagtgcatggaagatgatgaggtgcagaagatgcggatggctgtcattgggggagtgatctttcttatttcaggtctggctatcttagttgccacagcatggtatggtaacagaattgttcaagaattctatgaccccatgaccccagtcaatgccagatatgaatttggtcaggctctcttcactggctgggctgctgcttctctctgccttctgggaggtgccctactttgctgctcctgcccccgaaaaacaacatcttacccaacaccaaggccctatccaaaaccttcgccttccagtgggaaagactacgtgtgacacagaatctaaaggacaaaaccgtgtgggaacaaccagaaaatggacattgaaatactgtcattgacactgagatcttcgacttttgactgttagagtctgaactgtggtataaccaaaaaaaacattattttttaaaatacccattgctaaaaatgacatggtcttattttatctcctttcctcaatacaggagggaagccattttcatgtgtattactgcttcccactgagtaatcatctcgaatgtggggagagggcggtccttaaatatatatagatatgtacatatacatgttttttctataaaaaattagtaaaagctcttattctctttatgttggcataagcatacttaaaatatacctaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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