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2024-03-29 15:58:33, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001200793            1033 bp    mRNA    linear   VRT 19-FEB-2023
DEFINITION  Ictalurus punctatus claudin 15-like a (cldn15la), mRNA.
ACCESSION   NM_001200793
VERSION     NM_001200793.1
KEYWORDS    RefSeq.
SOURCE      Ictalurus punctatus (channel catfish)
  ORGANISM  Ictalurus punctatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Ictaluridae; Ictalurus.
REFERENCE   1  (bases 1 to 1033)
  AUTHORS   Liu S, Zhang Y, Zhou Z, Waldbieser G, Sun F, Lu J, Zhang J, Jiang
            Y, Zhang H, Wang X, Rajendran KV, Khoo L, Kucuktas H, Peatman E and
            Liu Z.
  TITLE     Efficient assembly and annotation of the transcriptome of catfish
            by RNA-Seq analysis of a doubled haploid homozygote
  JOURNAL   BMC Genomics 13, 595 (2012)
   PUBMED   23127152
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1033)
  AUTHORS   Chen F, Lee Y, Jiang Y, Wang S, Peatman E, Abernathy J, Liu H, Liu
            S, Kucuktas H, Ke C and Liu Z.
  TITLE     Identification and characterization of full-length cDNAs in channel
            catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus)
  JOURNAL   PLoS ONE 5 (7), e11546 (2010)
   PUBMED   20634964
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from GU589083.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: GU589083.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN04372580 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1033
                     /organism="Ictalurus punctatus"
                     /mol_type="mRNA"
                     /db_xref="taxon:7998"
                     /chromosome="20"
                     /map="20"
     gene            1..1033
                     /gene="cldn15la"
                     /gene_synonym="cld15; CLDN25"
                     /note="claudin 15-like a"
                     /db_xref="GeneID:100528523"
     exon            1..301
                     /gene="cldn15la"
                     /gene_synonym="cld15; CLDN25"
                     /inference="alignment:Splign:2.0.8"
     misc_feature    46..48
                     /gene="cldn15la"
                     /gene_synonym="cld15; CLDN25"
                     /note="upstream in-frame stop codon"
     CDS             85..741
                     /gene="cldn15la"
                     /gene_synonym="cld15; CLDN25"
                     /note="claudin 25; claudin-15"
                     /codon_start=1
                     /product="claudin 15-like a precursor"
                     /protein_id="NP_001187722.1"
                     /db_xref="GeneID:100528523"
                     /translation="
MSTALELTGFLLGVASWLVTGAALANDYWKVSSFSGSVIISSRQYENLWHACAEDSSGVANCRDFDSLLDLESFLQACRALMIIALILGLFSMIVSILGLKCIQVGSSSDQAKAKKAVAGGVLFILAGLCTMTAISWYAARIVEDFKNPFSGGIKFELGAGLYIGWGGACLSILGGALLSCACKDASSGQAKGGYYARSQAVKIHKPVSESETARAYV"
     sig_peptide     85..159
                     /gene="cldn15la"
                     /gene_synonym="cld15; CLDN25"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    91..621
                     /gene="cldn15la"
                     /gene_synonym="cld15; CLDN25"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
     exon            302..466
                     /gene="cldn15la"
                     /gene_synonym="cld15; CLDN25"
                     /inference="alignment:Splign:2.0.8"
     exon            467..548
                     /gene="cldn15la"
                     /gene_synonym="cld15; CLDN25"
                     /inference="alignment:Splign:2.0.8"
     exon            549..662
                     /gene="cldn15la"
                     /gene_synonym="cld15; CLDN25"
                     /inference="alignment:Splign:2.0.8"
     exon            663..1015
                     /gene="cldn15la"
                     /gene_synonym="cld15; CLDN25"
                     /inference="alignment:Splign:2.0.8"
ORIGIN      
aagagaaggagaagagcgtttttaagcttgataaaggctgctctgtgatttgatttggtgttcgtgagaaaagtcagggtgaaaatgtcgacagcgttggaattgaccgggttcttgctcggtgttgcatcttggttggtaacaggcgccgctctggccaacgactactggaaagtctcgtctttctccggtagtgtcatcatctcaagccgtcagtatgagaacctgtggcacgcgtgtgccgaagacagctccggggtcgccaattgccgagacttcgactccctactggacttagaaagcttcctccaagcatgtcgggctctgatgatcatcgcccttatcttaggcctcttctctatgatcgtgtccatcctgggcctcaagtgcattcaggtcgggagctccagcgatcaagcgaaggctaagaaagccgtcgctggtggcgtcctctttatcctagcaggtctttgtacgatgacggccatctcgtggtacgccgcacgcatcgttgaagactttaaaaaccctttcagtggaggcattaaattcgagctgggggcgggactgtacataggatggggcggagcatgtctctccattctgggcggagctctgctcagctgcgcctgcaaagacgcatcttcaggacaagccaagggtggatactacgccaggagtcaagcggtaaagatccacaaacccgtgtctgagtcagagacggcaagggcttacgtttaaaccccagagatttctctgcatgtagtgttgttacttggtttttcgttttaacccacccttttttttttctacattttttttaaaaatacggggctcatgattaatgtggaatcggatttgttaatgataaaagaatattttacggatgttggatatcatgtcgttcgattactgagatttatctgtattgtgttatttgttttaaaaggcgaaggctagttgtgtggtaaacagagtttatcttgggttcaataaagttgaattgaatggaacaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]