2024-04-26 02:32:33, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001193969 2080 bp mRNA linear PRI 11-JUL-2020 DEFINITION Macaca mulatta claudin 1 (CLDN1), mRNA. ACCESSION NM_001193969 XM_001093143 VERSION NM_001193969.1 KEYWORDS RefSeq. SOURCE Macaca mulatta (Rhesus monkey) ORGANISM Macaca mulatta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca. REFERENCE 1 (bases 1 to 2080) AUTHORS Zimin AV, Cornish AS, Maudhoo MD, Gibbs RM, Zhang X, Pandey S, Meehan DT, Wipfler K, Bosinger SE, Johnson ZP, Tharp GK, Marcais G, Roberts M, Ferguson B, Fox HS, Treangen T, Salzberg SL, Yorke JA and Norgren RB Jr. TITLE A new rhesus macaque assembly and annotation for next-generation sequencing analyses JOURNAL Biol. Direct 9 (1), 20 (2014) PUBMED 25319552 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2080) AUTHORS Yan G, Zhang G, Fang X, Zhang Y, Li C, Ling F, Cooper DN, Li Q, Li Y, van Gool AJ, Du H, Chen J, Chen R, Zhang P, Huang Z, Thompson JR, Meng Y, Bai Y, Wang J, Zhuo M, Wang T, Huang Y, Wei L, Li J, Wang Z, Hu H, Yang P, Le L, Stenson PD, Li B, Liu X, Ball EV, An N, Huang Q, Zhang Y, Fan W, Zhang X, Li Y, Wang W, Katze MG, Su B, Nielsen R, Yang H, Wang J, Wang X and Wang J. TITLE Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques JOURNAL Nat. Biotechnol. 29 (11), 1019-1023 (2011) PUBMED 22002653 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from QNVO02000282.1. On Aug 11, 2010 this sequence version replaced XM_001093143.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: JV635805.1, JV045368.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA4688315, SAMEA4688322 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-492 QNVO02000282.1 1830441-1830932 c 493-657 QNVO02000282.1 1821316-1821480 c 658-742 QNVO02000282.1 1818633-1818717 c 743-2080 QNVO02000282.1 1815570-1816907 c FEATURES Location/Qualifiers source 1..2080 /organism="Macaca mulatta" /mol_type="mRNA" /db_xref="taxon:9544" /chromosome="2" /map="2" gene 1..2080 /gene="CLDN1" /gene_synonym="claudin-1" /note="claudin 1" /db_xref="GeneID:704330" /db_xref="VGNC:VGNC:71242" exon 1..492 /gene="CLDN1" /gene_synonym="claudin-1" /inference="alignment:Splign:2.1.0" misc_feature 159..161 /gene="CLDN1" /gene_synonym="claudin-1" /note="upstream in-frame stop codon" CDS 270..905 /gene="CLDN1" /gene_synonym="claudin-1" /codon_start=1 /product="claudin-1" /protein_id="NP_001180898.1" /db_xref="GeneID:704330" /db_xref="VGNC:VGNC:71242" /translation="
MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGVIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDYV"
misc_feature 282..788 /gene="CLDN1" /gene_synonym="claudin-1" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; pfam00822" /db_xref="CDD:395662" exon 493..657 /gene="CLDN1" /gene_synonym="claudin-1" /inference="alignment:Splign:2.1.0" exon 658..742 /gene="CLDN1" /gene_synonym="claudin-1" /inference="alignment:Splign:2.1.0" exon 743..2080 /gene="CLDN1" /gene_synonym="claudin-1" /inference="alignment:Splign:2.1.0" ORIGIN
ctttaaatcgcggcgcccagcggtttggcgtctcagttcctgagcctgggagcaaccgcagcttctagtatccagactccagcgccgcccgggccccggaccccagcccggacccagagcttctccagcggcggcgcagcgagcagggctccccgctttaacttcctccgcggggcccagccaccttcgggagcccgcgttgcgcacctgcaaactctctgccttctgcacctgccacccctgagccagcgcgggcggccgagcgagtcatggccaacgcggggctgcagcttttgggcttcattctcgccttcctgggatggatcggcgccatcgtcagcactgccctgccccagtggaggatttactcctatgccggcgacaacatcgtgaccgcccaggccatgtacgaggggctgtggatgtcctgcgtgtcgcagagcaccgggcagatccagtgcaaagtctttgactccttgctgaatctgagcagcacattgcaagcaacccgtgccttgatggtggttggcatcctcctgggagtgatagcaatctttgtggccaccgttggcatgaagtgtatgaagtgcttggaagacgatgaggtacagaagatgaggatggctgtcattgggggcgtgatatttcttcttgcaggtctggctattttagttgccacagcatggtatggcaatagaattgttcaagaattctatgaccccatgaccccagtcaatgccaggtacgaatttggtcaggctctcttcactggctgggctgctgcttctctctgccttctgggaggtgccctactttgctgttcctgtcctcgaaaaacaacttcatacccaacaccacggccctatccaaaacctgcaccttccagtgggaaagactacgtgtgacacagaggcaaaaggagacaatcatgttggaacaaactgaaaatggacattgagatactatcattaacattaggaccttagacttttgagtattgcaatctgaagtatggtattacaaaacaaacaaagaaacccatgtgttaaaaatacctattgctaaacatggcttagtcttattttatcttctttcctcaatacaggagggaagatttttccatttgtattactgcttcccattgagtaatcatactcaaatgggggaagggggtgctcttaaatatatatagatgtgtatatatacatgtttttctattaaaaatagacagtaaaatactcttctcattatgttgatactagcatacttaaaatatctctaaaaataggtaaatgtatttaattccatattgatgaaaatgtttattggtatattttttttgtttatgtatacatatataatagtcaaatatcatttactcttcttcattagcttttagtgtctttgccataagacctagtctaatctaccaagaatgaattctttcaattcttcatgcgtgcccttttcatatacttattttattttttaccataatcttatagcacttgcatcgttattaagcccttatttgttttgtgtttcattggtctctatctcctgaagctaacacatttcatagtctacattttagtttctaaagccaataagaatttattacaaatcagaactttggaggcaaatctttctgcatgaccaaagtgataaattcctgttgaccttcccacacagtcctcgtactctgacccatagcattcttgtttgctttgaaaatatttgtccaattgagtagctgcatgctgttcacccaggtgttgtaacacaattttatggattgaattatgaagctacttattcatacttatatatcccacctaaactacctttttgttccccttccttaattgtattgttttcccacatgtaattatcatgtagtttatatcttcctaataaggtgtggtctgtttgtctgaacaaaatgctagactttctggagtgataagctggtgacaaatattctctctgcagctgtaagcaagtcacttaatctttctacctcttttttctatctgccaaattgagataatgatttaaccagttagaagaggtagtgtga
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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