2024-03-29 19:26:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001164980 1822 bp mRNA linear INV 04-MAY-2019 DEFINITION Saccoglossus kowalevskii TGFB-induced factor homeobox 1 (tgif1), mRNA. ACCESSION NM_001164980 VERSION NM_001164980.1 KEYWORDS RefSeq. SOURCE Saccoglossus kowalevskii ORGANISM Saccoglossus kowalevskii Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae; Saccoglossus. REFERENCE 1 (bases 1 to 1822) AUTHORS Freeman RM Jr, Wu M, Cordonnier-Pratt MM, Pratt LH, Gruber CE, Smith M, Lander ES, Stange-Thomann N, Lowe CJ, Gerhart J and Kirschner M. TITLE cDNA sequences for transcription factors and signaling proteins of the hemichordate Saccoglossus kowalevskii: efficacy of the expressed sequence tag (EST) approach for evolutionary and developmental studies of a new organism JOURNAL Biol. Bull. 214 (3), 284-302 (2008) PUBMED 18574105 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EU939748.1. ##Evidence-Data-START## Transcript exon combination :: EU939748.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1822 /organism="Saccoglossus kowalevskii" /mol_type="mRNA" /db_xref="taxon:10224" gene 1..1822 /gene="tgif1" /gene_synonym="tgif" /note="TGFB-induced factor homeobox 1" /db_xref="GeneID:100303488" CDS 184..1188 /gene="tgif1" /gene_synonym="tgif" /note="TG-interacting homeobox protein" /codon_start=1 /product="TGFB-induced factor homeobox 1" /protein_id="NP_001158452.1" /db_xref="GeneID:100303488" /translation="
MKPKRVRSSKLRFLDNEFEDSYDTDAFMSSKKHRLDGLHPKKRRGNLPKEAVNVLKNWLYEHRLNAYPSDQDKLLLSRSANLSILQVCNWFINARRRILPEMIRRDGRDPTEYTISRKNNTVKSHVKRDKERVKCSVKKEKSYSENYDAKHNKAPDTPPYNPTDSCAYAPPPYFPMSYPASESETECAKHLAAISNGQYHPYYSDRVNPISYNSTCYQTAVNMTAQASCNDYVDNSTPTNTAPRQTTLDFDHRTGFPDNTSNCDRSSTSTPPPPAVTTSQTPPPTPPAREEDVFSRFKILVDVAISQMKELEQEEQLVKQQQQQQQQHLVTGRA"
misc_feature order(304..318,322..324,382..384,400..402,439..441, 445..450,457..462,466..474) /gene="tgif1" /gene_synonym="tgif" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(310..312,319..321,448..450,457..462,469..471) /gene="tgif1" /gene_synonym="tgif" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 358..474 /gene="tgif1" /gene_synonym="tgif" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" ORIGIN
caaatcgactgcgacaagcgtcctgtatctattcgcattgcagcagccataagggttactacgagaacacgctcattgctaccgctgctgaaaatcgtacaggatttgtccggaatccttgtgtcaacccaccaactgtcaacatacgacgatcctttggataacctatccacgtccactactatgaagccaaagcgagtacgcagttccaaactccgtttccttgacaacgaatttgaggattcatacgacacagacgccttcatgtcaagtaaaaagcatcgccttgatggtctccatcccaagaagcgaagaggaaacttgccaaaagaagctgtgaacgtcttgaaaaactggctgtatgaacataggttgaacgcgtatcctagcgaccaggacaagctgctcctgtctcgctcggccaacctgtctattctacaggtgtgcaactggttcattaacgcaagacgccgaatattaccggagatgatccgacgtgatggcagagacccaacagaatacacaatcagtagaaaaaacaacactgtcaaatcgcatgtgaaaagagataaagaaagagtcaaatgtagcgtcaaaaaagagaagtcttactctgaaaactatgatgcaaaacacaataaagctccagacactcctccttataaccctacagattcctgtgcctacgcaccgccgccttatttcccgatgtcgtatcctgcttcggaatcagagaccgaatgtgccaagcatcttgcggcgatcagcaacggccagtatcacccgtattacagcgatagagtcaacccaatatcatacaacagtacgtgttaccagaccgctgtgaatatgacagcccaagcaagttgtaacgactatgttgacaatagtaccccgacaaacactgctcccaggcaaacaactttggactttgatcaccgcactggtttccctgataacacatcgaactgtgatcgctcatcaacctcgacgcctcctccccccgctgtgactacgtcacagacccctccccctacgcctccagcccgtgaagaagatgttttctcacggttcaagatactcgtggatgttgcaatcagtcaaatgaaggaacttgaacaggaagaacaactagtgaaacaacaacaacagcaacaacaacaacatttagtgacaggaagagcgtgacagttttcacctcactagtcagtaccttccatgctcgtattgaattatggtgatttttttatattttgtgtacacatttaataaacgtacacacagagtatttatcgacatttttatttctttttacttttttgcaatatcgctaactggcgagaaacatagccctatattttacacatattgtttttaatatgcttgtcaactaggaatttatatatagcgtgcgtagtgactggagtaagcactaatactccctattgtagatttatacatttcatattttttatagtgcttttaaaaaatattgcctgtgtagttttatagttgtaatattgttcagttttgataaatttgccatgtggtgttttcattaagcctgggcaatacctcccccaccgtatggctgcatattcccaaaatgaatttatatataatatgtgccgagtttaattttttaaacttcatcaccttttgaaatgtagtattttcattgtgtatatatatttttcaattttattttcttgaataatttttcgtgttttaacacgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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