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2024-03-29 19:26:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001164980            1822 bp    mRNA    linear   INV 04-MAY-2019
DEFINITION  Saccoglossus kowalevskii TGFB-induced factor homeobox 1 (tgif1),
            mRNA.
ACCESSION   NM_001164980
VERSION     NM_001164980.1
KEYWORDS    RefSeq.
SOURCE      Saccoglossus kowalevskii
  ORGANISM  Saccoglossus kowalevskii
            Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae;
            Saccoglossus.
REFERENCE   1  (bases 1 to 1822)
  AUTHORS   Freeman RM Jr, Wu M, Cordonnier-Pratt MM, Pratt LH, Gruber CE,
            Smith M, Lander ES, Stange-Thomann N, Lowe CJ, Gerhart J and
            Kirschner M.
  TITLE     cDNA sequences for transcription factors and signaling proteins of
            the hemichordate Saccoglossus kowalevskii: efficacy of the
            expressed sequence tag (EST) approach for evolutionary and
            developmental studies of a new organism
  JOURNAL   Biol. Bull. 214 (3), 284-302 (2008)
   PUBMED   18574105
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EU939748.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EU939748.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Saccoglossus kowalevskii"
                     /mol_type="mRNA"
                     /db_xref="taxon:10224"
     gene            1..1822
                     /gene="tgif1"
                     /gene_synonym="tgif"
                     /note="TGFB-induced factor homeobox 1"
                     /db_xref="GeneID:100303488"
     CDS             184..1188
                     /gene="tgif1"
                     /gene_synonym="tgif"
                     /note="TG-interacting homeobox protein"
                     /codon_start=1
                     /product="TGFB-induced factor homeobox 1"
                     /protein_id="NP_001158452.1"
                     /db_xref="GeneID:100303488"
                     /translation="
MKPKRVRSSKLRFLDNEFEDSYDTDAFMSSKKHRLDGLHPKKRRGNLPKEAVNVLKNWLYEHRLNAYPSDQDKLLLSRSANLSILQVCNWFINARRRILPEMIRRDGRDPTEYTISRKNNTVKSHVKRDKERVKCSVKKEKSYSENYDAKHNKAPDTPPYNPTDSCAYAPPPYFPMSYPASESETECAKHLAAISNGQYHPYYSDRVNPISYNSTCYQTAVNMTAQASCNDYVDNSTPTNTAPRQTTLDFDHRTGFPDNTSNCDRSSTSTPPPPAVTTSQTPPPTPPAREEDVFSRFKILVDVAISQMKELEQEEQLVKQQQQQQQQHLVTGRA"
     misc_feature    order(304..318,322..324,382..384,400..402,439..441,
                     445..450,457..462,466..474)
                     /gene="tgif1"
                     /gene_synonym="tgif"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(310..312,319..321,448..450,457..462,469..471)
                     /gene="tgif1"
                     /gene_synonym="tgif"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    358..474
                     /gene="tgif1"
                     /gene_synonym="tgif"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
ORIGIN      
caaatcgactgcgacaagcgtcctgtatctattcgcattgcagcagccataagggttactacgagaacacgctcattgctaccgctgctgaaaatcgtacaggatttgtccggaatccttgtgtcaacccaccaactgtcaacatacgacgatcctttggataacctatccacgtccactactatgaagccaaagcgagtacgcagttccaaactccgtttccttgacaacgaatttgaggattcatacgacacagacgccttcatgtcaagtaaaaagcatcgccttgatggtctccatcccaagaagcgaagaggaaacttgccaaaagaagctgtgaacgtcttgaaaaactggctgtatgaacataggttgaacgcgtatcctagcgaccaggacaagctgctcctgtctcgctcggccaacctgtctattctacaggtgtgcaactggttcattaacgcaagacgccgaatattaccggagatgatccgacgtgatggcagagacccaacagaatacacaatcagtagaaaaaacaacactgtcaaatcgcatgtgaaaagagataaagaaagagtcaaatgtagcgtcaaaaaagagaagtcttactctgaaaactatgatgcaaaacacaataaagctccagacactcctccttataaccctacagattcctgtgcctacgcaccgccgccttatttcccgatgtcgtatcctgcttcggaatcagagaccgaatgtgccaagcatcttgcggcgatcagcaacggccagtatcacccgtattacagcgatagagtcaacccaatatcatacaacagtacgtgttaccagaccgctgtgaatatgacagcccaagcaagttgtaacgactatgttgacaatagtaccccgacaaacactgctcccaggcaaacaactttggactttgatcaccgcactggtttccctgataacacatcgaactgtgatcgctcatcaacctcgacgcctcctccccccgctgtgactacgtcacagacccctccccctacgcctccagcccgtgaagaagatgttttctcacggttcaagatactcgtggatgttgcaatcagtcaaatgaaggaacttgaacaggaagaacaactagtgaaacaacaacaacagcaacaacaacaacatttagtgacaggaagagcgtgacagttttcacctcactagtcagtaccttccatgctcgtattgaattatggtgatttttttatattttgtgtacacatttaataaacgtacacacagagtatttatcgacatttttatttctttttacttttttgcaatatcgctaactggcgagaaacatagccctatattttacacatattgtttttaatatgcttgtcaactaggaatttatatatagcgtgcgtagtgactggagtaagcactaatactccctattgtagatttatacatttcatattttttatagtgcttttaaaaaatattgcctgtgtagttttatagttgtaatattgttcagttttgataaatttgccatgtggtgttttcattaagcctgggcaatacctcccccaccgtatggctgcatattcccaaaatgaatttatatataatatgtgccgagtttaattttttaaacttcatcaccttttgaaatgtagtattttcattgtgtatatatatttttcaattttattttcttgaataatttttcgtgttttaacacgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]