2024-03-29 07:56:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001164939 2158 bp mRNA linear INV 04-MAY-2019 DEFINITION Saccoglossus kowalevskii homeobox 6 (hox6), mRNA. ACCESSION NM_001164939 VERSION NM_001164939.1 KEYWORDS RefSeq. SOURCE Saccoglossus kowalevskii ORGANISM Saccoglossus kowalevskii Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae; Saccoglossus. REFERENCE 1 (bases 1 to 2158) AUTHORS Aronowicz J and Lowe CJ. TITLE Hox gene expression in the hemichordate Saccoglossus kowalevskii and the evolution of deuterostome nervous systems JOURNAL Integr. Comp. Biol. 46 (6), 890-901 (2006) PUBMED 21672793 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ985449.1. ##Evidence-Data-START## Transcript exon combination :: DQ985449.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..2158 /organism="Saccoglossus kowalevskii" /mol_type="mRNA" /db_xref="taxon:10224" gene 1..2158 /gene="hox6" /note="homeobox 6" /db_xref="GeneID:100303539" CDS 34..762 /gene="hox6" /codon_start=1 /product="homeobox 6" /protein_id="NP_001158411.1" /db_xref="GeneID:100303539" /translation="
MSSYFPSLNSYQTTQSEYPSSQVGLYSANYDPIRQLQSYSVPENRGYAGYSDKYNYSEQRSTAGSAASNYAAVGYVTETNNNNYHNRQLAHNANLPHYDLSCNSTRNKDVVVDAMEAKKDKDSDSDSGKTPTIIYPWMRSNNYCGSDQRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHTLGLTERQIKIWFQNRRMKWKKEQKTGGAPSPKQFASSQTQNAMQVNGDSNDGSNGEIS"
misc_feature order(478..492,496..498,547..549,565..567,604..606, 610..615,622..627,631..639,643..648) /gene="hox6" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(484..486,493..495,613..615,622..627,634..636) /gene="hox6" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 487..645 /gene="hox6" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
caatcccccaactccccgtccgcgtacctagtaatgagttcgtattttccaagcctcaattcgtatcagacgacacagtctgagtacccgtcttcccaagtaggactgtacagcgcgaattatgatcccatacgccaactacagagctactcggtccccgagaaccgtggctatgccggttacagcgataaatacaactacagcgaacagcgttctactgcgggtagtgcagcgagcaactacgccgctgttgggtacgtaacagagaccaacaataacaactaccataatcgtcagttagcgcataacgcaaacttaccccattacgatttaagctgtaactcaacaagaaataaagatgtcgtcgttgatgcgatggaggcgaagaaagacaaagattccgacagtgacagcgggaaaacaccgacgattatatacccgtggatgcgaagcaacaactattgcggttcggatcagcgtcgtggtaggcagacctatacacggtatcaaacgctggagctggagaaggaattccatttcaatcgctacttaactcgccgtcgacgaatcgagatcgcacacacactggggctgacggaaaggcagattaaaatatggtttcagaatcgacgaatgaagtggaaaaaagaacagaaaactggcggcgcgccgtcaccgaaacagttcgcatcgagtcagacacagaacgcgatgcaggtgaatggcgactccaacgacggcagtaacggggagatatcgtgatagcacggcgtagatcctagaaaggraaaggaagcagactatctccaaattaaagaaggctcctttcgtcgagtatttatattttgcaacatagagaagaaacagaaaatttgcgacgtctaagctcaatatgttgcgttgttagaggtatgctggacgcgccatttccattgcatcctccagccaagacttccatggcgtttttcggaatgtcgtcttcctcaagtttgtttttttttaccccgaaaactcttggctgctctcaacagtctgttagaaaacctttaaactttttgcaccatgaactgcttatcaaatgtaaagaacgattgtgtgctattcaggtacgatcagactgttcaaatcccttagacgtgtgttatccagtaacttaataaccgcgcggaacagtttaatctgtgtttttcgctgaaatccaaaccatatcggtattaaatgtatatttttgacagttttcgctgtttcagcagcaactccgatatatataacatactgtgttctttttttctatcacgtggtgtgaaacaccggatgaatgtatattttgcaattaattgtttatattctatttttgctttgttttcacaatttattttattgaaagtaaaaaaaagagagagaacaaatgacgttgatttcagtaaaatcgaatcgacctgttttgaaaatttcgggggggattatatatgtataaatttatgtcgacgttaaagctgtagatgacgtcacaaccaactctgtgttctatgatgtaaacttcttgtcccaaaatatagaaacgcgcttgtaaagctcttagtatcgtgagatttgtattgtatatgctgtgtaggcaggtgacatcgcttcagaagttcgtagagcacgttttaaaaacgcagagggcaaggagttggttaagttcagtttgatctgtaacgtctctcgttctttctcgcgagagacacatgcatgatagtgttgactgcacgtaccttttcgtatatctaaaaaaaatagactactttacttggcgttgccatgcaaactgaaaataaagtacaagctgtgaattcttcaatttgaccttgaaaatcaagatcagggtcgtttttcagacgatatctgtttaacattttcgtaatgtctaattcacccgacctgacctcgttgttctgtggacrgtgttaggcttcgttttaaactccatggctgaatcattcggagtagtcggatacgcccgagttctgtctaattctctcggagttcgtcagtttttctttgttgtgacattgtaaattattacacgtattgtttcctggtgtaaaattgaccgttattacatgtattattgtgtaataaaattaattgtgtacgcataaaaaaaaaaaaaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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