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2024-03-29 07:56:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001164939            2158 bp    mRNA    linear   INV 04-MAY-2019
DEFINITION  Saccoglossus kowalevskii homeobox 6 (hox6), mRNA.
ACCESSION   NM_001164939
VERSION     NM_001164939.1
KEYWORDS    RefSeq.
SOURCE      Saccoglossus kowalevskii
  ORGANISM  Saccoglossus kowalevskii
            Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae;
            Saccoglossus.
REFERENCE   1  (bases 1 to 2158)
  AUTHORS   Aronowicz J and Lowe CJ.
  TITLE     Hox gene expression in the hemichordate Saccoglossus kowalevskii
            and the evolution of deuterostome nervous systems
  JOURNAL   Integr. Comp. Biol. 46 (6), 890-901 (2006)
   PUBMED   21672793
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from DQ985449.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DQ985449.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2158
                     /organism="Saccoglossus kowalevskii"
                     /mol_type="mRNA"
                     /db_xref="taxon:10224"
     gene            1..2158
                     /gene="hox6"
                     /note="homeobox 6"
                     /db_xref="GeneID:100303539"
     CDS             34..762
                     /gene="hox6"
                     /codon_start=1
                     /product="homeobox 6"
                     /protein_id="NP_001158411.1"
                     /db_xref="GeneID:100303539"
                     /translation="
MSSYFPSLNSYQTTQSEYPSSQVGLYSANYDPIRQLQSYSVPENRGYAGYSDKYNYSEQRSTAGSAASNYAAVGYVTETNNNNYHNRQLAHNANLPHYDLSCNSTRNKDVVVDAMEAKKDKDSDSDSGKTPTIIYPWMRSNNYCGSDQRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHTLGLTERQIKIWFQNRRMKWKKEQKTGGAPSPKQFASSQTQNAMQVNGDSNDGSNGEIS"
     misc_feature    order(478..492,496..498,547..549,565..567,604..606,
                     610..615,622..627,631..639,643..648)
                     /gene="hox6"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(484..486,493..495,613..615,622..627,634..636)
                     /gene="hox6"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    487..645
                     /gene="hox6"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      
caatcccccaactccccgtccgcgtacctagtaatgagttcgtattttccaagcctcaattcgtatcagacgacacagtctgagtacccgtcttcccaagtaggactgtacagcgcgaattatgatcccatacgccaactacagagctactcggtccccgagaaccgtggctatgccggttacagcgataaatacaactacagcgaacagcgttctactgcgggtagtgcagcgagcaactacgccgctgttgggtacgtaacagagaccaacaataacaactaccataatcgtcagttagcgcataacgcaaacttaccccattacgatttaagctgtaactcaacaagaaataaagatgtcgtcgttgatgcgatggaggcgaagaaagacaaagattccgacagtgacagcgggaaaacaccgacgattatatacccgtggatgcgaagcaacaactattgcggttcggatcagcgtcgtggtaggcagacctatacacggtatcaaacgctggagctggagaaggaattccatttcaatcgctacttaactcgccgtcgacgaatcgagatcgcacacacactggggctgacggaaaggcagattaaaatatggtttcagaatcgacgaatgaagtggaaaaaagaacagaaaactggcggcgcgccgtcaccgaaacagttcgcatcgagtcagacacagaacgcgatgcaggtgaatggcgactccaacgacggcagtaacggggagatatcgtgatagcacggcgtagatcctagaaaggraaaggaagcagactatctccaaattaaagaaggctcctttcgtcgagtatttatattttgcaacatagagaagaaacagaaaatttgcgacgtctaagctcaatatgttgcgttgttagaggtatgctggacgcgccatttccattgcatcctccagccaagacttccatggcgtttttcggaatgtcgtcttcctcaagtttgtttttttttaccccgaaaactcttggctgctctcaacagtctgttagaaaacctttaaactttttgcaccatgaactgcttatcaaatgtaaagaacgattgtgtgctattcaggtacgatcagactgttcaaatcccttagacgtgtgttatccagtaacttaataaccgcgcggaacagtttaatctgtgtttttcgctgaaatccaaaccatatcggtattaaatgtatatttttgacagttttcgctgtttcagcagcaactccgatatatataacatactgtgttctttttttctatcacgtggtgtgaaacaccggatgaatgtatattttgcaattaattgtttatattctatttttgctttgttttcacaatttattttattgaaagtaaaaaaaagagagagaacaaatgacgttgatttcagtaaaatcgaatcgacctgttttgaaaatttcgggggggattatatatgtataaatttatgtcgacgttaaagctgtagatgacgtcacaaccaactctgtgttctatgatgtaaacttcttgtcccaaaatatagaaacgcgcttgtaaagctcttagtatcgtgagatttgtattgtatatgctgtgtaggcaggtgacatcgcttcagaagttcgtagagcacgttttaaaaacgcagagggcaaggagttggttaagttcagtttgatctgtaacgtctctcgttctttctcgcgagagacacatgcatgatagtgttgactgcacgtaccttttcgtatatctaaaaaaaatagactactttacttggcgttgccatgcaaactgaaaataaagtacaagctgtgaattcttcaatttgaccttgaaaatcaagatcagggtcgtttttcagacgatatctgtttaacattttcgtaatgtctaattcacccgacctgacctcgttgttctgtggacrgtgttaggcttcgttttaaactccatggctgaatcattcggagtagtcggatacgcccgagttctgtctaattctctcggagttcgtcagtttttctttgttgtgacattgtaaattattacacgtattgtttcctggtgtaaaattgaccgttattacatgtattattgtgtaataaaattaattgtgtacgcataaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]