2024-03-29 14:56:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001164937 3042 bp mRNA linear INV 04-MAY-2019 DEFINITION Saccoglossus kowalevskii homeobox 2 (hox2), mRNA. ACCESSION NM_001164937 VERSION NM_001164937.1 KEYWORDS RefSeq. SOURCE Saccoglossus kowalevskii ORGANISM Saccoglossus kowalevskii Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae; Saccoglossus. REFERENCE 1 (bases 1 to 3042) AUTHORS Aronowicz J and Lowe CJ. TITLE Hox gene expression in the hemichordate Saccoglossus kowalevskii and the evolution of deuterostome nervous systems JOURNAL Integr. Comp. Biol. 46 (6), 890-901 (2006) PUBMED 21672793 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ985445.1. ##Evidence-Data-START## Transcript exon combination :: DQ985445.1, FF644941.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..3042 /organism="Saccoglossus kowalevskii" /mol_type="mRNA" /db_xref="taxon:10224" gene 1..3042 /gene="hox2" /note="homeobox 2" /db_xref="GeneID:100303537" exon 1..940 /gene="hox2" /inference="alignment:Splign:1.39.8" misc_feature 607..609 /gene="hox2" /note="upstream in-frame stop codon" CDS 634..1785 /gene="hox2" /codon_start=1 /product="homeobox 2" /protein_id="NP_001158409.1" /db_xref="GeneID:100303537" /translation="
MDGGLELGFINTQPCMAEFLTSVGRNINESTYCSQSITHNSTSATDKNSVNISSCAQTTCSAPELQHTLQTKSNHVPSVKLPEYPWVEEPCSKTDEEGDDKSVNGKEAGHHRRVRTAFTNTQLLELEKEFHYNKYLCRPRRIEIASMLDLSERQVKVWFQNRRMKHKRQIMKAAVSGSPIPNNETQNSMVSATSSPSGSDQGKQGVNGNVNGLSPSPDSRSTPCVTSNDDGKQREPYLFTSNVCCANTVSPTSPSLNFASSAAPIHRNPETYTSFNYQPANNNCVIVSAPHTDGYLGRDSHGNVGNMAAAEYDTSSPTFRNVPGYGHQRSATDNRTTFSGNGRLVISSNHGDDDHSPSSLFTYNSYRAASNHHPYYVGNAVQF"
misc_feature order(967..981,985..987,1036..1038,1054..1056,1093..1095, 1099..1104,1111..1116,1120..1128,1132..1137) /gene="hox2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(973..975,982..984,1102..1104,1111..1116,1123..1125) /gene="hox2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 976..1134 /gene="hox2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" exon 941..3042 /gene="hox2" /inference="alignment:Splign:1.39.8" ORIGIN
acccagtcccgggatgagactttgcggttagagatttgcaatgttgacagtgcattcgtgactaaataatgccatcactacgtgtctatggtgaagcttaaacacgactgtcagattctaatggttaagtgtgaaaatattggtcggttagggtcattaaacgctaagacgtcacgaaaataacttgacaatatgatttgtgaggcgtttataaacgcccagtgccatcccgcataaatcgccggctcacgttttgaaaatagtcgttttaaaaatatatgtaccagaaaccagtttcgaaaagtcagtttttaggattttgtggattcgccaaattgatatttattcgaaattattttttactgttgacgtcattcattcacaccatatggaccgggatggtaagcgtttgaaatattcaaatatgccagcgtcgagcctatcatagtacgcgttatctgattggcggttgcgttaccacgtgagcattaagtggtcaccgacagggagtatgttttgctaactttctaattccgagtcaccatagtcaaagttaactcgccaattgcaaaaatcgctcctgttgtttacggattccagagttcttgacacaaatttcaccctgtgcgtagaatggacgggggacttgaacttggctttatcaatactcagccgtgtatggcggagtttctgacaagtgtgggtcgtaatatcaatgagtcgacgtactgctcgcaatcaatcacgcacaattcgacatctgcaaccgacaagaactctgtgaacatctcgtcatgtgcccagacgacttgctcagctccggaactccagcacacgctccaaaccaaaagcaaccatgttccatccgtcaagttgccggaatacccytgggtagaggaaccttgctcaaagacagacgaggaaggcgacgacaaaagcgttaacggcaaagaagcggggcatcatcggcgagtacggacggccttcacaaacactcaactcttggagctcgagaaagagttccactacaacaagtatctgtgccggcctcgtcgaattgagatcgcttccatgctcgacttgtcggagagacaagtgaaagtttggtttcaaaaccgtagaatgaaacacaagagacagatcatgaaagctgcggtctcagggagcccgattccgaataacgagactcagaattcgatggttagtgcgactagcagtccttctgggtcagatcagggtaaacagggagttaatggcaatgtgaatggactgtccccttcacctgacagccgatcgaccccgtgtgtcaccagtaacgacgatggtaagcaaagggagccctatctattcacttctaatgtgtgttgtgctaataccgtctctccgactagcccatcactcaacttcgcgtcgtcagctgcacccattcacagaaaccctgagacgtacaccagttttaactaccagcctgccaacaacaactgtgtcatcgttagcgctccacacacagacggttacctcgggcgagactcgcacggaaacgtgggcaatatggccgcagcagaatacgacactagctcgccgacttttagaaacgttccaggctatgggcatcagcgatctgctaccgacaacaggactacattctctgggaacggtcgtttagtaatatcaagtaaccatggtgacgacgaccactccccttctagtctttttacttacaacagttacagagctgctagtaatcaccatccgtactatgtcggaaatgctgttcaattttaatttggaaccttttttttttagatattcgagttcttcaattgttttggtttctgctgtttctttgaccaaaacattcatacggctatcagggtacgtttagaaaccgtatacatgtcgtttgtttataccgaagttctgtacaatgagtcagtgtcgtgcatggcgacaactaccctccgttaaaacgcggtttttaaggaaaaatggccgacatgcagacactgttttcgaagttttcatggcaacaagaacaaaagttcgtatacagggttagtccaccgatttgcacagggtattttaagagctatatagttataatttcaatttatttttattcatcaaatttcaattaatttattgacgtcagtagaaaatgtaaaacttttttttttgaaaacttaatgcaataaattgtcaaaaattgaatctatgcccagtactattgatatttttggttacttgaaatgttgctatcgtctttaattttgtatatagatatagttggcctaattatgtcattgtcgtcttaatgtgtttgatgacctagaaacttaggtactcaacaactgaataccagcacaaagagaatgaacgattttgtgctttattaaaaaaaagtgaacgacgtttgtagcctgatttcaactttaaactgtctatatgctgctgtttttgtatggcaatgtaacaatcgtagaatcacgttattgagagcgttgatatatgattgagtatgtttttattttttcataaatcaggccctgatattgttcagtgttaatatgtcattaattcatacgatttggttttataaacaaggaaattcgttgcccgtgatgttggatggttttagcccacgttgcatcaatatggaggctgtaatggcggttagtatccgccgagaacaagaaccgatagagtgtgtttgtgtgtcgctttctagattttacaacgtgaatgaggtgattaatcacctataaccatggcaacgtagtgtttttagtcaaatgttcgtcgaattgtgtgtatcttcagtttcagtgtcaacggtgaggtcccgcgttgggggtttcacagttatgtttgtaactgacaaatatagtcttggaaggcaacgaattcaaattacggcgcgtacttttaatatacatgctataactcgtttataactgagcaacccggttatttattcaactggtttccgggtgtggacatttattgcgttatcaactcgactgtctagcgagctgaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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