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2024-03-29 14:56:32, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001164937            3042 bp    mRNA    linear   INV 04-MAY-2019
DEFINITION  Saccoglossus kowalevskii homeobox 2 (hox2), mRNA.
ACCESSION   NM_001164937
VERSION     NM_001164937.1
KEYWORDS    RefSeq.
SOURCE      Saccoglossus kowalevskii
  ORGANISM  Saccoglossus kowalevskii
            Eukaryota; Metazoa; Hemichordata; Enteropneusta; Harrimaniidae;
            Saccoglossus.
REFERENCE   1  (bases 1 to 3042)
  AUTHORS   Aronowicz J and Lowe CJ.
  TITLE     Hox gene expression in the hemichordate Saccoglossus kowalevskii
            and the evolution of deuterostome nervous systems
  JOURNAL   Integr. Comp. Biol. 46 (6), 890-901 (2006)
   PUBMED   21672793
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from DQ985445.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DQ985445.1, FF644941.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3042
                     /organism="Saccoglossus kowalevskii"
                     /mol_type="mRNA"
                     /db_xref="taxon:10224"
     gene            1..3042
                     /gene="hox2"
                     /note="homeobox 2"
                     /db_xref="GeneID:100303537"
     exon            1..940
                     /gene="hox2"
                     /inference="alignment:Splign:1.39.8"
     misc_feature    607..609
                     /gene="hox2"
                     /note="upstream in-frame stop codon"
     CDS             634..1785
                     /gene="hox2"
                     /codon_start=1
                     /product="homeobox 2"
                     /protein_id="NP_001158409.1"
                     /db_xref="GeneID:100303537"
                     /translation="
MDGGLELGFINTQPCMAEFLTSVGRNINESTYCSQSITHNSTSATDKNSVNISSCAQTTCSAPELQHTLQTKSNHVPSVKLPEYPWVEEPCSKTDEEGDDKSVNGKEAGHHRRVRTAFTNTQLLELEKEFHYNKYLCRPRRIEIASMLDLSERQVKVWFQNRRMKHKRQIMKAAVSGSPIPNNETQNSMVSATSSPSGSDQGKQGVNGNVNGLSPSPDSRSTPCVTSNDDGKQREPYLFTSNVCCANTVSPTSPSLNFASSAAPIHRNPETYTSFNYQPANNNCVIVSAPHTDGYLGRDSHGNVGNMAAAEYDTSSPTFRNVPGYGHQRSATDNRTTFSGNGRLVISSNHGDDDHSPSSLFTYNSYRAASNHHPYYVGNAVQF"
     misc_feature    order(967..981,985..987,1036..1038,1054..1056,1093..1095,
                     1099..1104,1111..1116,1120..1128,1132..1137)
                     /gene="hox2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(973..975,982..984,1102..1104,1111..1116,1123..1125)
                     /gene="hox2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    976..1134
                     /gene="hox2"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     exon            941..3042
                     /gene="hox2"
                     /inference="alignment:Splign:1.39.8"
ORIGIN      
acccagtcccgggatgagactttgcggttagagatttgcaatgttgacagtgcattcgtgactaaataatgccatcactacgtgtctatggtgaagcttaaacacgactgtcagattctaatggttaagtgtgaaaatattggtcggttagggtcattaaacgctaagacgtcacgaaaataacttgacaatatgatttgtgaggcgtttataaacgcccagtgccatcccgcataaatcgccggctcacgttttgaaaatagtcgttttaaaaatatatgtaccagaaaccagtttcgaaaagtcagtttttaggattttgtggattcgccaaattgatatttattcgaaattattttttactgttgacgtcattcattcacaccatatggaccgggatggtaagcgtttgaaatattcaaatatgccagcgtcgagcctatcatagtacgcgttatctgattggcggttgcgttaccacgtgagcattaagtggtcaccgacagggagtatgttttgctaactttctaattccgagtcaccatagtcaaagttaactcgccaattgcaaaaatcgctcctgttgtttacggattccagagttcttgacacaaatttcaccctgtgcgtagaatggacgggggacttgaacttggctttatcaatactcagccgtgtatggcggagtttctgacaagtgtgggtcgtaatatcaatgagtcgacgtactgctcgcaatcaatcacgcacaattcgacatctgcaaccgacaagaactctgtgaacatctcgtcatgtgcccagacgacttgctcagctccggaactccagcacacgctccaaaccaaaagcaaccatgttccatccgtcaagttgccggaatacccytgggtagaggaaccttgctcaaagacagacgaggaaggcgacgacaaaagcgttaacggcaaagaagcggggcatcatcggcgagtacggacggccttcacaaacactcaactcttggagctcgagaaagagttccactacaacaagtatctgtgccggcctcgtcgaattgagatcgcttccatgctcgacttgtcggagagacaagtgaaagtttggtttcaaaaccgtagaatgaaacacaagagacagatcatgaaagctgcggtctcagggagcccgattccgaataacgagactcagaattcgatggttagtgcgactagcagtccttctgggtcagatcagggtaaacagggagttaatggcaatgtgaatggactgtccccttcacctgacagccgatcgaccccgtgtgtcaccagtaacgacgatggtaagcaaagggagccctatctattcacttctaatgtgtgttgtgctaataccgtctctccgactagcccatcactcaacttcgcgtcgtcagctgcacccattcacagaaaccctgagacgtacaccagttttaactaccagcctgccaacaacaactgtgtcatcgttagcgctccacacacagacggttacctcgggcgagactcgcacggaaacgtgggcaatatggccgcagcagaatacgacactagctcgccgacttttagaaacgttccaggctatgggcatcagcgatctgctaccgacaacaggactacattctctgggaacggtcgtttagtaatatcaagtaaccatggtgacgacgaccactccccttctagtctttttacttacaacagttacagagctgctagtaatcaccatccgtactatgtcggaaatgctgttcaattttaatttggaaccttttttttttagatattcgagttcttcaattgttttggtttctgctgtttctttgaccaaaacattcatacggctatcagggtacgtttagaaaccgtatacatgtcgtttgtttataccgaagttctgtacaatgagtcagtgtcgtgcatggcgacaactaccctccgttaaaacgcggtttttaaggaaaaatggccgacatgcagacactgttttcgaagttttcatggcaacaagaacaaaagttcgtatacagggttagtccaccgatttgcacagggtattttaagagctatatagttataatttcaatttatttttattcatcaaatttcaattaatttattgacgtcagtagaaaatgtaaaacttttttttttgaaaacttaatgcaataaattgtcaaaaattgaatctatgcccagtactattgatatttttggttacttgaaatgttgctatcgtctttaattttgtatatagatatagttggcctaattatgtcattgtcgtcttaatgtgtttgatgacctagaaacttaggtactcaacaactgaataccagcacaaagagaatgaacgattttgtgctttattaaaaaaaagtgaacgacgtttgtagcctgatttcaactttaaactgtctatatgctgctgtttttgtatggcaatgtaacaatcgtagaatcacgttattgagagcgttgatatatgattgagtatgtttttattttttcataaatcaggccctgatattgttcagtgttaatatgtcattaattcatacgatttggttttataaacaaggaaattcgttgcccgtgatgttggatggttttagcccacgttgcatcaatatggaggctgtaatggcggttagtatccgccgagaacaagaaccgatagagtgtgtttgtgtgtcgctttctagattttacaacgtgaatgaggtgattaatcacctataaccatggcaacgtagtgtttttagtcaaatgttcgtcgaattgtgtgtatcttcagtttcagtgtcaacggtgaggtcccgcgttgggggtttcacagttatgtttgtaactgacaaatatagtcttggaaggcaacgaattcaaattacggcgcgtacttttaatatacatgctataactcgtttataactgagcaacccggttatttattcaactggtttccgggtgtggacatttattgcgttatcaactcgactgtctagcgagctgaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]