2024-04-23 20:48:10, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001146065 885 bp mRNA linear INV 19-FEB-2022 DEFINITION Bombyx mori special homeobox protein 1 (shx1), mRNA. ACCESSION NM_001146065 VERSION NM_001146065.1 KEYWORDS RefSeq. SOURCE Bombyx mori (domestic silkworm) ORGANISM Bombyx mori Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx. REFERENCE 1 (bases 1 to 885) AUTHORS Ou J, Deng HM, Zheng SC, Huang LH, Feng QL and Liu L. TITLE Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis JOURNAL BMC Genomics 15, 820 (2014) PUBMED 25261999 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 885) AUTHORS Chai CL, Zhang Z, Huang FF, Wang XY, Yu QY, Liu BB, Tian T, Xia QY, Lu C and Xiang ZH. TITLE A genomewide survey of homeobox genes and identification of novel structure of the Hox cluster in the silkworm, Bombyx mori JOURNAL Insect Biochem Mol Biol 38 (12), 1111-1120 (2008) PUBMED 19280701 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EU284708.1. ##Evidence-Data-START## Transcript exon combination :: GBJR01006775.1, ICPK01045566.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN16712263, SAMN16712264 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..885 /organism="Bombyx mori" /mol_type="mRNA" /db_xref="taxon:7091" /chromosome="6" /map="6" gene 1..885 /gene="shx1" /note="special homeobox protein 1" /db_xref="GeneID:100271933" CDS 1..885 /gene="shx1" /codon_start=1 /product="special homeobox protein 1" /protein_id="NP_001139537.1" /db_xref="GeneID:100271933" /translation="
MNTSDGAPQVPSTSSYNHQEQSVMPENPVLTNAEAQHKNIRLQPPNQQSCFIRGSNGANVYINNNTNPYMSMLSAPTWPTQGTGVPRLVNPAQTWNNIAVNKVNNGGAKKPKRVRTAFTSNQMTELEQEYTRTKYLDRARRLELAEILQLNERTIKIWFQNRRMKEKKILTERLGESEETSTTASSPDLGPLPIYHNYTFNNLRFTERSQPAQPYSIMPTYGHQTLLQPPTVNGMVASSTGAPGTGLQQLKLQDFEVNQPIGNSMQASTPPMPNTNNMSWDLSWIHSMNTQYEY"
misc_feature 331..501 /gene="shx1" /note="Homeodomain; Region: HOX; smart00389" /db_xref="CDD:197696" misc_feature order(334..348,352..354,403..405,421..423,460..462, 466..471,478..483,487..495,499..504) /gene="shx1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(340..342,349..351,469..471,478..483,490..492) /gene="shx1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 1..36 /gene="shx1" /inference="alignment:Splign:2.1.0" exon 37..885 /gene="shx1" /inference="alignment:Splign:2.1.0" ORIGIN
atgaatacaagcgacggtgcgcctcaagttccttcgacttcatcttacaatcatcaggaacagtctgtgatgccggaaaaccccgttctcacgaacgcagaagcacaacacaaaaacatcagacttcagcctccgaatcagcagtcatgctttattcgcggctcaaacggagctaacgtatacattaacaacaacacaaatccatacatgagtatgttaagtgctccgacatggccaacacaaggtacaggtgttccgcgacttgtgaatccagcacaaacatggaacaacattgctgtaaacaaagttaacaatggaggcgccaaaaaaccaaagcgtgtgagaacagcattcactagcaaccaaatgacggaactagagcaagaatacactcgcacaaagtacctagaccgggcacgtcgcttggagctggcggaaatcttacagctcaacgagaggaccataaaaatatggttccagaacagaagaatgaaagagaaaaagattttgacggagcgcttaggagagtctgaagaaaccagcacgactgcttcttcgccagatttaggcccacttccaatatatcacaactatacattcaataacctaaggtttactgaacgaagtcaaccagcacaaccttattcgatcatgccgacctatggacatcaaacgttacttcagcctccgacagtaaatggaatggttgccagttcaacaggagctcccgggacagggctccaacaactaaagttacaggattttgaggttaatcagcctattggaaattcaatgcaagcgagcacaccgcccatgccgaataccaataatatgtcctgggacttatcctggattcacagtatgaacacccaatatgaatattga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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