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2024-04-25 14:37:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001133979            2234 bp    mRNA    linear   PRI 26-MAR-2023
DEFINITION  Pongo abelii claudin domain containing 1 (CLDND1), mRNA.
ACCESSION   NM_001133979
VERSION     NM_001133979.1
KEYWORDS    RefSeq.
SOURCE      Pongo abelii (Sumatran orangutan)
  ORGANISM  Pongo abelii
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Pongo.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CR859505.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CR859505.1, CR926087.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2234
                     /organism="Pongo abelii"
                     /mol_type="mRNA"
                     /db_xref="taxon:9601"
                     /chromosome="3"
                     /map="3"
     gene            1..2234
                     /gene="CLDND1"
                     /note="claudin domain containing 1"
                     /db_xref="GeneID:100174522"
     exon            1..88
                     /gene="CLDND1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    61..63
                     /gene="CLDND1"
                     /note="upstream in-frame stop codon"
     CDS             82..912
                     /gene="CLDND1"
                     /codon_start=1
                     /product="claudin domain-containing protein 1"
                     /protein_id="NP_001127451.1"
                     /db_xref="GeneID:100174522"
                     /translation="
MGGDRLENKTSVSVASWSSLNARMDNRFATAFVIACVLSLISTIYMAASIGTDFWYEYRSPVQENSSDLNKSIWDEFISDEADEKTYNDALFRYNGTVGLWRRCITIPKNMHWYSPPERTESFDVVTKCVSFTLTEQFMEKFVDPGNHNSGIDLLRTYLWRCQFLLPFVSLGLMCFGALIGLCACICRSLYPTIATGILHLLAGLCTLGSVSCYVAGIELLHQKLELPDNVSGEFGWSFCLACVSAPLQFMASALFIWAAHTNRKEYTLMKAYRVA"
     misc_feature    199..852
                     /gene="CLDND1"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
     exon            89..132
                     /gene="CLDND1"
                     /inference="alignment:Splign:2.1.0"
     exon            133..442
                     /gene="CLDND1"
                     /inference="alignment:Splign:2.1.0"
     exon            443..553
                     /gene="CLDND1"
                     /inference="alignment:Splign:2.1.0"
     exon            554..691
                     /gene="CLDND1"
                     /inference="alignment:Splign:2.1.0"
     exon            692..2096
                     /gene="CLDND1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
cagggaagtgcgtcagaggaggcgcggggagagtagggtgctgtggtccgagctagagggtgaagctggcggagcaggaggatgggcggtgatagactagagaacaagacctctgtctccgtagcatcctggagcagtctgaatgccagaatggataaccgttttgctacagcatttgtaattgcttgtgtgcttagcctcatttccaccatctacatggcagcctccattggcacagacttctggtatgaatatcgaagtccagttcaagaaaattccagtgatttgaataaaagcatctgggatgaattcattagtgatgaggcagatgaaaagacttataatgatgcactttttcgatacaatggtacagtgggattgtggagacggtgtatcaccatacccaaaaacatgcattggtatagcccaccagaaaggacagagtcatttgatgtggtcacaaaatgtgtgagtttcacactaactgagcagttcatggagaaatttgttgatcccggaaaccacaatagcgggattgatctacttaggacctatctttggcgttgccagttccttttaccttttgtgagtttaggtttgatgtgctttggggctttgatcggactttgtgcttgcatttgccgaagcttatatcccaccattgccacgggcattctccatctccttgcaggtctgtgtacactgggctcagtaagttgttatgttgctggaattgaactactccaccagaaactagagctccctgacaatgtatccggtgaatttggatggtccttctgcctggcttgtgtctcagctcccttacagttcatggcttctgctctcttcatctgggctgctcacaccaaccggaaagagtacaccttaatgaaggcatatcgcgtggcatgagcaagaaactgcctgctttacaattgccatttttatttttttaaaataatactgatattttccccacctctcaattgtttttaatttttattttatttgtggatataccattttattatgaaaatctattttatttatacacattcaccactaaatacacacttaataccactaaaatttatgtggtttactttaagcgatgccatctttcaaataaactaatctagatctagacagaaagaaatggatagagacttgacacaaatttatgaaagaaaattggcagtaggaatgtgacccaaaacaagttgtgctgatgtctgttagacttttcagtaaaactaaagtaactgtatccgttcaactaaaaactctatattagtttctttgggaaacctctcatcgtcaaaactttatgttcactttgctgttgtagatagccagtcagccagcagtattagtgctattttcaaagatttaagctctataaaattgggaaattatctaagatcattttccctaagcattgacacatagcttcatctgaggtgagatatggcagctgtttgtatctgcactgtgtctgtctacaaaaagtgaaaaatacagtgtttacttgaaattttaactttgtaactgcaagaattccagttcagccaggcaaggattaatattatttttaactctccataagattttcagtaccaccaaattgttttggattttttttctttcctcttcacataccagggttattaaaagtgtgctttctttttaacattatattacagttacaaagtaaaattccccaactgctatttattcattccagcccagtaccataaagaacgtttcaccataatgaccctccagagctgggaaacccaccacaagatctaaagttctggctgtccattaacctccaactatggtctttatttcttgtggtaatatgatgtgcctttccttgcctaaatcccttcctggtgtgtatcaacattatttaatgtcttctaatccagtcatttttttataagtatgtctataaacattgaactttaaaaaatcttatttatttattccactactgtagcaattggcagattaaaaaaaatgtaacttcgtaatttcttaccataacctcaatgtcttttttaaaaaataaaattgaaaatgaaaagagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]