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2024-03-29 02:11:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001129916            1036 bp    mRNA    linear   VRT 05-JAN-2021
DEFINITION  Xenopus tropicalis VENT homeobox 3, gene 2 (ventx3.2), mRNA.
ACCESSION   NM_001129916
VERSION     NM_001129916.1
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and
            Richardson P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC167675.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC167675.1, CX435103.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00028290, SAMD00028291
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8364"
                     /chromosome="7"
                     /map="7"
     gene            1..1036
                     /gene="ventx3.2"
                     /gene_synonym="vex1; Xvex-1"
                     /note="VENT homeobox 3, gene 2"
                     /db_xref="GeneID:100170150"
                     /db_xref="Xenbase:XB-GENE-483077"
     exon            1..295
                     /gene="ventx3.2"
                     /gene_synonym="vex1; Xvex-1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    22..24
                     /gene="ventx3.2"
                     /gene_synonym="vex1; Xvex-1"
                     /note="upstream in-frame stop codon"
     CDS             31..879
                     /gene="ventx3.2"
                     /gene_synonym="vex1; Xvex-1"
                     /note="ventral homeobox 1; ventral homeobox protein;
                     homeodomain transcription factor vex-1"
                     /codon_start=1
                     /product="homeobox protein vex1"
                     /protein_id="NP_001123388.1"
                     /db_xref="GeneID:100170150"
                     /db_xref="Xenbase:XB-GENE-483077"
                     /translation="
MEKRPYSVAWLSESSQRKPLCTNVDLLGYKSGNPDLPPNREYNVSLPSRVILPTPDYREKENYCGRNVHNGERSPPVRDQLHFHPAPQELTTSRRTSIEVSAESSTDQRVIGMTDTNKKTKSVCDEDAASRARTKFTAEQLEELEKSFKENRYIGSSEKRRLSKVLKLSENQIKTWFQNRRMKFKRQTQDARVEAFFSGLYLPYYGYPDLPTPGYSVQSEFPVLAPQTMAASSIPFGPLHSTVMSPGLHPAIPSANLGSYPCSSMLVRPILNEPTRQRYSPY"
     misc_feature    order(421..432,436..438,487..489,505..507,544..546,
                     550..555,562..567,571..579,583..588)
                     /gene="ventx3.2"
                     /gene_synonym="vex1; Xvex-1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(424..426,433..435,553..555,562..567,574..576)
                     /gene="ventx3.2"
                     /gene_synonym="vex1; Xvex-1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    427..585
                     /gene="ventx3.2"
                     /gene_synonym="vex1; Xvex-1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     exon            296..546
                     /gene="ventx3.2"
                     /gene_synonym="vex1; Xvex-1"
                     /inference="alignment:Splign:2.1.0"
     exon            547..1021
                     /gene="ventx3.2"
                     /gene_synonym="vex1; Xvex-1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
gtggaaggggaaacacaaacgtgaaggactatggagaagagaccatactcagtggcatggctttcagagagcagtcagaggaaacccctctgcaccaatgtggatctattgggatacaaaagtggaaatccagacttgccgcctaacagggaatacaatgtctcattgccatcgagagttatattgccaactccggactacagagagaaggaaaattattgtggaaggaatgtccacaatggagagagaagcccaccggttagagaccaactgcatttccacccagcaccacaagagcttactacatctcgaaggacttcaatagaggtttccgctgagtcaagcactgaccaacgagtcattggcatgactgacaccaataagaagacaaaatctgtatgtgatgaagatgccgcttccagagcccgcaccaagttcaccgctgagcagctggaggagcttgagaagagcttcaaggagaacagatacattggatccagtgagaaaaggcggctgtccaaggtgctgaaactctctgagaatcagatcaaaacctggtttcagaatagaaggatgaagttcaagcgccaaacacaagatgcaagggttgaagctttcttttcaggactttatttgccttattatggttaccccgaccttccaacacctggatattccgtccagtcggagtttcctgtcctggctcctcagacaatggcagcctcatctattccatttggccctctgcactctactgtaatgtcacctggactccatccagctattccttccgcaaaccttggctcttatccatgctcttccatgcttgtacgcccaatactcaatgagcccacccgacaaagatacagcccatactaactgaaagcattcttggagcaccattgttattattttttatggacacattcaattatttattataagttattacacaatgtaaaaaagagaacattctgttttattactaattttaataataaaaaaaatctgttttaatgcaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]