2024-03-29 10:05:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001124224 2127 bp mRNA linear VRT 09-NOV-2020 DEFINITION Oncorhynchus mykiss NK2 homeobox 1b (nkx2.1b), mRNA. ACCESSION NM_001124224 VERSION NM_001124224.1 KEYWORDS RefSeq. SOURCE Oncorhynchus mykiss (rainbow trout) ORGANISM Oncorhynchus mykiss Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB159044.1. ##Evidence-Data-START## Transcript exon combination :: AB159044.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN02178821, SAMN05195102 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..2127 /organism="Oncorhynchus mykiss" /mol_type="mRNA" /db_xref="taxon:8022" /chromosome="8" /map="8" gene 1..2127 /gene="nkx2.1b" /note="NK2 homeobox 1b" /db_xref="GeneID:100135830" exon 1..482 /gene="nkx2.1b" /inference="alignment:Splign:2.1.0" misc_feature 110..112 /gene="nkx2.1b" /note="upstream in-frame stop codon" CDS 116..1150 /gene="nkx2.1b" /note="transcription factor Nkx2.1b" /codon_start=1 /product="NK2 homeobox 1b" /protein_id="NP_001117696.1" /db_xref="GeneID:100135830" /translation="
MSLSPKHSTPFSVTDILSPIEETYRKFGGMDCTGSLASPLGAYRQTSVSQPGLQQHSMGHNNGVASAYHMPHSVSQFSSAMGGYCNGSIGNMGDLPSYQDTMRNGAAATAWYSANTEPRYPTISRFMGASNGMNMAGMGTLAGMDATKSMVTLHSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLSPTQVKIWFQNHRYKMKRQAKDKATLQIQQENGNVCPQQSPRRVAVPVLVKDGKPSQNGSSTPTSGHQQVQQQNVSSGAMTASGSAVVNHHQNQLVHHPLSTAEELEEMSPSPPILHSQINMAQTEAALIEYTNNMVSSNLLYGRTW"
misc_feature order(590..604,608..610,659..661,677..679,716..718, 722..727,734..739,743..751,755..760) /gene="nkx2.1b" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 596..757 /gene="nkx2.1b" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(596..598,605..607,725..727,734..739,746..748) /gene="nkx2.1b" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 483..2127 /gene="nkx2.1b" /inference="alignment:Splign:2.1.0" ORIGIN
ctcagacggacccacaagtactctattacgtaggtgtcctgtgagcagtgaggggacaacagcaccacagtcgggcttgttccgcgttcagccatattcacctgcgggctaaaccatgtccttgagcccaaagcactcaactcctttctcagtgacagatattttaagcccgatcgaggagacctacagaaagtttggaggaatggactgtacagggagcctcgcgtctccgctgggagcatatcgacagacttcggtgtctcaaccgggactgcagcagcactccatgggccataacaacggggtggcgagcgcttatcacatgccacacagcgtctcccaattttccagcgccatgggtggatactgcaacggcagcatcggtaatatgggagacctcccgtcgtaccaagacaccatgaggaacggcgcagcagcaactgcatggtatagcgcaaacaccgaaccccgctatccaacaatttctagattcatgggggcttccaatgggatgaacatggccgggatggggacgcttgctgggatggacgccaccaagtccatggtgaccctacactcagcgcccaggagaaaacgaagggtgctcttctctcaggcccaggtgtacgagctggagaggcggtttaagcagcagaaatacctgtcagcacctgagagggaacacctagcgagcatgatccacctgtcaccgacacaggtcaagatttggttccagaaccaccggtacaaaatgaaacgccaggcgaaggacaaagccacactgcagattcaacaggagaatggcaatgtgtgcccacagcagtcaccgaggcgtgtggcagtcccggttctcgtgaaggatggtaagcccagtcagaacggatccagcacaccgacgtctgggcatcagcaggtgcagcagcagaacgtctctagtggagcgatgacagcttcgggcagtgcggtggtcaatcaccatcagaatcagctggtgcatcatccattatccactgctgaagaactggaggaaatgtcccccagtccccctattttacacagccagattaacatggctcagacagaagcggctctcatcgagtacaccaataacatggtcagttcaaacctgctttatggcagaacttggtagaaggaagaaatgtacatttgaattcgggagacaataacgtcaagtggattttaagccggaaagacattggtcgttgatgacattgaggacaacagaagcaccagaatttcttgacattttgggaggtgcatggtgcacatattattaattaacagtcggccgtgcgtgtatacttttgatcaagagtatttgataaaaatgagactcccaagcactccgtaacggtattattcgggtgtaaaagggagtgaagttatttgttgcgattcaattctttaaggacacgagggtatcagtccgaagtattgtaatatttcgatgaatgaaccttaactgtatatagctaacaaaaatatttcatgtgactatgatttttgtttttaaacgaaatatttgttaaaaaattgttttggtaaattacaaaatgtgattgctgctgcatagcgtacatatatacaaatcacattcctgttaaactttaacaatatatcgcttggcatgtaagcattactgcttatttatgttgatagaataattatgaggcacattgactggaatgcatcgaatttcacaggtatagcacaatgatttcaaacagatctaatgtaatttaattattcaaatgatattgtactttacattatagcaatgttacaatttgtgttgtttctttcttattaccaccacacaattattgaaagaaaacagattcaatacatgtaaattccaatattttctgccattacaagccatcatggttaagtggagataaacatttaagcacctagtctatacagcatgatataaagtcctaaaacgcaagactacttgcaggagattaaattggacctgttaggctaatgtttgggcgaaaaaggtatattatcaggtgatgaaaggttagaatttccaagcaactgtaactgcactcaattgtttcagattgtcatttccaataaatatatatattttttttt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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