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2024-03-29 00:06:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001122909            1195 bp    mRNA    linear   VRT 27-JUN-2020
DEFINITION  Oryzias latipes GS homeobox 2 (gsx2), mRNA.
ACCESSION   NM_001122909
VERSION     NM_001122909.1
KEYWORDS    RefSeq.
SOURCE      Oryzias latipes (Japanese medaka)
  ORGANISM  Oryzias latipes
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes;
            Adrianichthyidae; Oryziinae; Oryzias.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from EF624465.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EF624465.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00029879, SAMD00029883
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1195
                     /organism="Oryzias latipes"
                     /mol_type="mRNA"
                     /db_xref="taxon:8090"
                     /chromosome="4"
                     /map="4"
     gene            1..1195
                     /gene="gsx2"
                     /note="GS homeobox 2"
                     /db_xref="GeneID:100144353"
     exon            1..438
                     /gene="gsx2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    42..44
                     /gene="gsx2"
                     /note="upstream in-frame stop codon"
     CDS             63..779
                     /gene="gsx2"
                     /codon_start=1
                     /product="GS homeobox 2"
                     /protein_id="NP_001116381.1"
                     /db_xref="GeneID:100144353"
                     /translation="
MSRSFYVDSLIIKDTVRPGPADHPGQDFLIPISMHSPSVMSVTAPVCPSRKTGTFCVCPLCVTSHIHAPCSGIPMLKSQFPGAEAQYCQRLAQQQPPALAHPGHAPVCTPTFSVRDPRRYHYLSMGSSENSHAQNGKRMRTAFTSTQLLELEREFSTNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKATQRSAHSSCKCAVALTDYSQSEDEKSLSPASASEDKEVSPL"
     misc_feature    order(471..485,489..491,540..542,558..560,597..599,
                     603..608,615..620,624..632,636..641)
                     /gene="gsx2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(477..479,486..488,606..608,615..620,627..629)
                     /gene="gsx2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    480..638
                     /gene="gsx2"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     exon            439..1176
                     /gene="gsx2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
gccatcgtcatcatcatcatcctcgtcatcaccagggagcctgaagccatcgcagcgcagtcatgtccaggtctttctatgtcgactccttaataatcaaggatactgtgcgacctggaccagcggatcatccaggacaagacttcctcattcccatcagcatgcactccccgagcgtaatgtctgtcaccgcgccggtgtgcccgtcccgaaaaaccgggactttctgcgtttgcccgctgtgcgtcacatcccacatccacgctccctgcagtggaattcccatgctgaagagtcagttcccaggcgcagaggcacagtactgtcagaggctggcacagcagcagcctcctgcgctcgcgcatcctggacatgcacctgtctgcacgcccaccttcagcgtcagagatcccaggagataccactatctttccatgggttcctctgaaaatagccacgctcagaatggcaaaaggatgcgcacggctttcacgagcacgcaactcctggagcttgaaagggagttttcaacgaacatgtacctttccagactgagaagaatcgaaatcgccacgtatttgaatctgtcagaaaagcaggtgaaaatctggtttcaaaatcgcagagtgaagcacaagaaggagggcaaagccacccagaggagcgcgcactcaagttgcaaatgcgcagtggctcttacagactattcacagtcggaggatgagaaatctttatctccggcctctgcttcggaggacaaggaggtgtcccctctctgagactcagtggactgctggagtcccatggtggcacttaactctgccctgcatgctgcaatcatggcatcgacctctgaaccaaaaacgtcctgcatgaagtcgataaactaagggtgctaagagaaaaccttcacttccattctcactatgactgaatagcagtttttgacatttaaatactgtgttgaagactgagcgcatgcgtgcttcgtatcgtggttctcacctgcactccaactgaccctcacttcaatagatgttgcctgataattcaacaacgagtgaagcatgtgttgtaaaaaggaaagacgaaaagtgcaggcgtaacttagagcgtgcacgcaggaatttgtacatacatacctgtatttattgcaataaacatgacgagctggagcaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]