LOCUS       NM_001105017            1809 bp    mRNA    linear   MAM 10-SEP-2023
DEFINITION  Bos taurus homeobox A10 (HOXA10), mRNA.
ACCESSION   NM_001105017 XR_027988
VERSION     NM_001105017.1
KEYWORDS    RefSeq.
SOURCE      Bos taurus (cattle)
  ORGANISM  Bos taurus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Bovidae; Bovinae; Bos.
REFERENCE   1  (bases 1 to 1809)
  AUTHORS   Li Q, Chen Y, Adeniran SO, Qiu Z, Zhao Q and Zheng P.
  TITLE     LIF regulates the expression of miR-27a-3p and HOXA10 in bovine
            endometrial epithelial cells via STAT3 pathway
  JOURNAL   Theriogenology 210, 101-109 (2023)
   PUBMED   37490795
  REMARK    GeneRIF: LIF regulates the expression of miR-27a-3p and HOXA10 in
            bovine endometrial epithelial cells via STAT3 pathway.
REFERENCE   2  (bases 1 to 1809)
  AUTHORS   Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D,
            Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marcais G,
            Roberts M, Subramanian P, Yorke JA and Salzberg SL.
  TITLE     A whole-genome assembly of the domestic cow, Bos taurus
  JOURNAL   Genome Biol 10 (4), R42 (2009)
   PUBMED   19393038
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC149226.1.
            
            On Sep 18, 2007 this sequence version replaced XR_027988.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC149226.1, EE332900.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN03145414, SAMN03145416
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1809
                     /organism="Bos taurus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9913"
                     /chromosome="4"
                     /map="4"
                     /breed="L1 Hereford"
     gene            1..1809
                     /gene="HOXA10"
                     /note="homeobox A10"
                     /db_xref="BGD:BT30321"
                     /db_xref="GeneID:784386"
                     /db_xref="VGNC:VGNC:53647"
     exon            1..249
                     /gene="HOXA10"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    180..182
                     /gene="HOXA10"
                     /note="upstream in-frame stop codon"
     CDS             240..524
                     /gene="HOXA10"
                     /note="homeobox protein A10"
                     /codon_start=1
                     /product="homeobox protein Hox-A10"
                     /protein_id="NP_001098487.1"
                     /db_xref="BGD:BT30321"
                     /db_xref="GeneID:784386"
                     /db_xref="VGNC:VGNC:53647"
                     /translation="

MCQGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS"

     misc_feature    order(300..314,318..320,369..371,387..389,426..428,
                     432..437,444..449,453..461,465..470)
                     /gene="HOXA10"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    306..467
                     /gene="HOXA10"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(306..308,315..317,435..437,444..449,456..458)
                     /gene="HOXA10"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            250..1781
                     /gene="HOXA10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtcaaagccgccggggagcggggaaccccagcgcgattcttggcctttgttcgcttctgattctaagagcagcacgttactttatttcacttgtcccgctctcctccgtatcaaaaaaaaagggggggctcaccttcaagaagtggttggtgttgtaatttaaagcagcgcgccttctctaggcctcgcaggcgtcgcggcgcggagaagccagctgtcccttggcagtgatttcggaaatgtgtcaaggcaattccaaaggcgaaaacgcagccaactggctcactgcaaagagcggccggaagaagcgctgcccctacaccaagcaccagacgctggagctggagaaggagtttctgttcaacatgtaccttactcgagagcggcgcctagagatcagccgcagcgtccacctcacggacagacaagttaaaatctggtttcagaaccgcaggatgaaactgaagaaaatgaaccgagaaaaccggatccgggagctcacagccaactttaatttttcctgatgaagctccaggcaatgtggttcatttcgtccagagaaccgttctcctccctcttgtcttcggctctgcccaggaactcgcacctgtgcgggagcccccccattcttccctcccacactcgccatctcgctggccgttacatctgtgcagggctggtttgttctgactttttgtttctttgtctgtttgcttggtgctggtttatttgttgttttctgggggaaaaagccatatcgcgctaaaattctatagagaatgctgtcctaagtgtcaagtggtgactgggatggtttgctgtctcggggttccactgcttgaaatggcctctgtcctccgggtgcagctggtttcctgcggggccagcaacctagccggaaggcggaggtcccattgtaggcagctgaggtgtctggcctgaggtcaatggtgcaaggagccgccaccgggcttgcctgcctggagtgcagggctgtctttaatcagggggcacaggcccctgggtttcttttctctttttttccttggcaaagagaagggcttgcagaaatgtacatgcaggttggcaaaagggttgactttggctgattggtaaaattgagaaaatcagaaagattcatttttccttcccctgtaagatagctcagctttaaaagaagaagaaatgaccaggagaaggaaacgtctcttccagtttgtgtaaggtcttgcattgtgggactaaattatttcagttactttgaatttccatgtccttctggctgtagataaataatagaatgtagttttgtttatacatgcaggtttagtgcattttttgtcattaaataattgttaccactggtaacataagacaagcacaccacaattctccctagtctgcagaggttccccccctttcccccccttttctttccaaaattcacagaagccgaggagggctggagcaagcggaatagactagagaagggagacattgctgggtttcctttatactgtgaagttacatgcataaaagggtcaaacctgtaggtgcagaaaaagaaaaaactataaaatacaaatctgtataaatgtctattattatgaaaaattgccaatcttgttttatgcaaatgcattctatcattattataaatgttagttctagttctatttacttctaatcttaaatcagaataaattaatattgtaatgctgctgtgcgtggaaaaaaaagatgtttatgttcttatagaagaataaaagctgtggaatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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