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2024-03-29 20:21:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001103312            2686 bp    mRNA    linear   MAM 03-FEB-2022
DEFINITION  Bos taurus orthopedia homeobox (OTP), mRNA.
ACCESSION   NM_001103312
VERSION     NM_001103312.1
KEYWORDS    RefSeq.
SOURCE      Bos taurus (cattle)
  ORGANISM  Bos taurus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Bovidae; Bovinae; Bos.
REFERENCE   1  (bases 1 to 2686)
  AUTHORS   Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D,
            Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marcais G,
            Roberts M, Subramanian P, Yorke JA and Salzberg SL.
  TITLE     A whole-genome assembly of the domestic cow, Bos taurus
  JOURNAL   Genome Biol. 10 (4), R42 (2009)
   PUBMED   19393038
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC149939.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC149939.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN03145419 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2686
                     /organism="Bos taurus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9913"
                     /chromosome="10"
                     /map="10"
                     /breed="Hereford"
     gene            1..2686
                     /gene="OTP"
                     /note="orthopedia homeobox"
                     /db_xref="GeneID:100125232"
                     /db_xref="VGNC:VGNC:55130"
     misc_feature    113..115
                     /gene="OTP"
                     /note="upstream in-frame stop codon"
     CDS             170..1147
                     /gene="OTP"
                     /codon_start=1
                     /product="homeobox protein orthopedia"
                     /protein_id="NP_001096782.1"
                     /db_xref="GeneID:100125232"
                     /db_xref="VGNC:VGNC:55130"
                     /translation="
MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSMSFT"
     misc_feature    488..634
                     /gene="OTP"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(488..490,497..499,617..619,626..631)
                     /gene="OTP"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1076..1129
                     /gene="OTP"
                     /note="OAR domain; Region: OAR; pfam03826"
                     /db_xref="CDD:427530"
ORIGIN      
tggacattataatgcaagaagccccctttttaaccacaaaccgaattttctttcatttaggtgatctatatatatctatatcgtatagcttatagcttatatctattttaaataacttaaagccgctaaaatttgggggggaacagctttcgccctggagcggtgcgcgatgctgtctcacgccgacctcctggacgccaggctaggtatgaaagatgccgccgagcttctgggccaccgggaggcggtgaagtgtaggctgggcgtagggggctctgaccccgggggccacccgggggacctagcgcccaactccgacccagtcgagggagccactctgctgcctggggaggacatcaccacagtgggctctacgccggcctcgctggcggtgagcgctaaggacccggacaagcagccggggccccagggcggcccgaaccccagccaagccggtcagcagcagggccaacagaagcaaaagcgccatcggacgcgcttcacccctgctcagctcaacgaactggagaggagcttcgccaagactcactaccccgacatcttcatgcgggaggagctggcacttcgtattgggctgaccgagtcccgagtgcaggtctggttccagaaccggcgcgctaagtggaagaagcgcaagaagaccaccaacgtgttccgcgcgccgggcacgctgctgcccacgccaggcctgccccagttcccgtcggctgccgccgccgccgccgccgccatgggcgacagcctgtgctctttccatgccaacgacacccgctgggcggcggccgccatgccgggcgtgtcgcagctgccgctgccgccggcgctgggcaggcagcaagccatggcgcagtcgctgtcccagtgcagcctggcggccgggccgccgcccaactccatgggcctgtccaacagcttggcgggctccaatggcgcggggctgcagtcgcatctctaccagcccgccttccccggcatggtgcccgcctccctccccggccccagcaacgtctccggctcgccccagctctgcagctccccggacagcagcgacgtgtggcggggaacgagcatcgcctccctccgccgcaaggcgctagagcacacagtctccatgagcttcacttaataccgccgcgcccggcccgctccgccccctgcaccgccccccggtccgccccgaggccccggcggcgcgcgccccggccccccgctccctgccccggccctcgcccgggcgccctgccccgttctcccgccgcggccccagccccggcgccctgctccctccccgcccggcctccaccacgtctcgtccggcccttccttccctccgtcctccactctcccgggctcaccccgagcctcggcccgcgaggcctccctcccgcctgattccgctccccgcaccccacccgcctcacctggcccctccctccgcccagtcgcgagcgcccggccccacgcctccccgcgccccgccgcctcccggcccgcactcgccgtgctcgcgccctccgcctggccttccgacgggcggcttgcccatccacaccttctccacgacgcctgcggccccctcgccccgcgcctcgcccctggtcccttcttgcccagctcctcacgcccccgcctcccgcgccctgccgaaagcatccttcccgccattttacttagcagggagtagactcaggatctgaaatcagacaccagtggactggtttgtgggcagaaacacacacacccgcactctcgctcactctcagacactacacacgcgcgcgcacacactcatacacagtgcacctaggtcacacacggacgtgttcaagggacagcacaatgttaggatttttgtctaaaaggagggcaagcatctactaccaaccgcctcatctgagggcctaactgattacaatttgatttatccctgtattcttgcaccgaactcctttctttcttctcccactagccgttccttgccttgtccatccagtcacatacctgcagccgtgtattggcttgcaagagaacgtttctgtttcatcttacttttattttcttaagtacaactatgtgagggtattgagggaaggcttctcaggaggaacatgtcagtggattgggtggctggagtagattaaagcagtcatgtgatgaagaggtgatcttacccattttgataaatgtctttatgagaaagaaagaaacacgtaagaaaattttccttttgtaaaagcaaaagccacatcttttttttctggatccttcaggactggggttggtttgcttccttttttccgtttctctctcctcgcgctgctctgtgcccttggttgtttttgtggtcgtcctgtctttcctcgtgcccctcggccactgccctggcccctgccggctgccgaagggtgcactcaggcatctacaaccctgcaactttgtacagagaaacgcaatcagctctttctgcatgtgctggtcaaatccaaacccagagaacagaagcgctttcgaagaatgaacaaacatgtgaaataggatgttttgtgtagataaagcattcttgttacatactggtcaatttgtgatatgttttaacttattgtctgtgcttatttatggaatttggttttcttaataaatgtttgagctaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]