LOCUS       NM_001101266            1836 bp    mRNA    linear   MAM 03-FEB-2022
DEFINITION  Bos taurus BARX homeobox 2 (BARX2), mRNA.
ACCESSION   NM_001101266 XM_869733
VERSION     NM_001101266.1
KEYWORDS    RefSeq.
SOURCE      Bos taurus (cattle)
  ORGANISM  Bos taurus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Bovidae; Bovinae; Bos.
REFERENCE   1  (bases 1 to 1836)
  AUTHORS   Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D,
            Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marcais G,
            Roberts M, Subramanian P, Yorke JA and Salzberg SL.
  TITLE     A whole-genome assembly of the domestic cow, Bos taurus
  JOURNAL   Genome Biol. 10 (4), R42 (2009)
   PUBMED   19393038
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC148101.1.
            
            On Aug 14, 2007 this sequence version replaced XM_869733.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC148101.1, GGVA01056918.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN03145412, SAMN03145413
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Bos taurus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9913"
                     /chromosome="29"
                     /map="29"
                     /breed="L1 Hereford"
     gene            1..1836
                     /gene="BARX2"
                     /note="BARX homeobox 2"
                     /db_xref="BGD:BT24685"
                     /db_xref="GeneID:617465"
                     /db_xref="VGNC:VGNC:26424"
     exon            1..461
                     /gene="BARX2"
                     /inference="alignment:Splign:2.1.0"
     CDS             275..1111
                     /gene="BARX2"
                     /note="BarH-like homeobox 2"
                     /codon_start=1
                     /product="homeobox protein BarH-like 2"
                     /protein_id="NP_001094736.1"
                     /db_xref="BGD:BT24685"
                     /db_xref="GeneID:617465"
                     /db_xref="VGNC:VGNC:26424"
                     /translation="

MHCHAELRLSSPGQLKAARRRYKTFMIDEILSKETCDYFEKLSLYSVCPSLVVRPKPLHSCTGPTSLRAYPLLSVITRQPTVISHLVPTTPGIAQVLSRHPATEAASAEAPGENHGSSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIEAEEKLNSQVHSQELLEPSQSLEGLCDMQKPKARVVPVEVAESPGQAQELPVASPEPPPSS"

     misc_feature    order(671..685,689..691,740..742,758..760,797..799,
                     803..808,815..820,824..832,836..841)
                     /gene="BARX2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    677..838
                     /gene="BARX2"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(677..679,686..688,806..808,815..820,827..829)
                     /gene="BARX2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            462..759
                     /gene="BARX2"
                     /inference="alignment:Splign:2.1.0"
     exon            760..844
                     /gene="BARX2"
                     /inference="alignment:Splign:2.1.0"
     exon            845..1810
                     /gene="BARX2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gccgacgcccctcggcggccagccctcggcgcagctccgcaccctgtcccgcaggaagcgcgcgctgattgacagctgcgatgtccccaaaaggctccgcgaagatgctgatccgcgggtgggtctagacgcgcggccggcgcgcccggtgccgcctcccctccgcacgcctcctgagccccgccgcctcccggccgcggaggagccgggccgaggcccccgccggcgtgccagccccacggccccggctggtgggcgctcgcccgggctcaccatgcactgccacgcggagctgaggctgagctcgcccggccaactcaaagcagccaggcggcgctacaagactttcatgatcgacgagatcctctccaaggagacctgcgattactttgagaaactttccctctactccgtgtgcccgtcactggtcgtgcgacccaagcctctgcattcctgtaccggccccacttccctccgggcatatcctctcctctcggtgatcacccgacagcccacggtcatctcccatctggtccccaccaccccgggaatcgcccaggttctgtcccgccacccggccactgaagctgcctctgcggaggccccaggcgagaaccacgggagcagcgagtctgagacggaacagcccacgccccggcagaaaaagccccgccggagccgcaccatcttcaccgagctgcagctcatgggcctggagaagaaattccagaagcagaagtacttgtccaccccagacaggttggacttggcccagtctctgggactcactcaactgcaggtgaagacctggtaccagaaccgcaggatgaaatggaaaaaaatggttcttaaaggtggacaggaagcacccacaaaacccaaaggtcgtcccaagaagaactccatccccacatcagaagagatagaagctgaagagaagctgaacagtcaggttcacagccaggagctcctagagccctcccagagcctggaggggctctgtgatatgcagaaaccaaaggcacgcgttgtccctgtggaggtggctgagtccccaggccaggcccaggagttgccagtagcctctccggaacccccaccatcaagctaaaataaaactcttggtcgaggggaagggggagactgggaagaagggaaagagagagggcagggagaccagggagaagaaagctgccaagagcccgagacctgggggagaagaccacggccggctccctccctcctgcccacggctctcagctccagcttttgaggaagacttgctagccttggcctgctcttcctgaaaggctgcctaagccacacaagcccttgactaagggacacagtgccttggaactgccagccccagttggggtgacgccgtggagctgtccaggtccaagctccccctggcatgatgggggacactccgaccagcctcggagcagctagccatcaaagcagagatggaggagtgggcagcatgcccaggttccttgctgactcagcacttatttctgtagctttaaaagaaaatttaatgtttttgattgttgtttttttttgggggggaggggtggtcggtgagggtgggcagataagagttgggggaagggagttttgagttaatagaataaagtttgtttgaagacacgtgtgcctttgtacccattataaggtagtcaggtgacccaggaactgataaaccttgtttttctcgcttgattcagttgccatccctgaagctgcaatgcagatatgttaagataacttttattttttaattaaaaataaatctttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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