2024-04-26 12:56:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001096910 1524 bp mRNA linear VRT 20-JUN-2021 DEFINITION Xenopus laevis homeobox B6 S homeolog (hoxb6.S), mRNA. ACCESSION NM_001096910 VERSION NM_001096910.1 KEYWORDS RefSeq. SOURCE Xenopus laevis (African clawed frog) ORGANISM Xenopus laevis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus. REFERENCE 1 (bases 1 to 1524) AUTHORS Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW and Richardson P. TITLE Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative JOURNAL Dev Dyn 225 (4), 384-391 (2002) PUBMED 12454917 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC123270.1. ##Evidence-Data-START## Transcript exon combination :: BC123270.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00012418, SAMD00012419 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1524 /organism="Xenopus laevis" /mol_type="mRNA" /db_xref="taxon:8355" /chromosome="9_10S" /map="9_10S" gene 1..1524 /gene="hoxb6.S" /gene_synonym="hox-2.2; hox2b; hoxb6; XlHox-2.2" /note="homeobox B6 S homeolog" /db_xref="GeneID:779290" /db_xref="Xenbase:XB-GENE-1006009" exon 1..449 /gene="hoxb6.S" /gene_synonym="hox-2.2; hox2b; hoxb6; XlHox-2.2" /inference="alignment:Splign:2.1.0" CDS 38..709 /gene="hoxb6.S" /gene_synonym="hox-2.2; hox2b; hoxb6; XlHox-2.2" /note="homeo box B6; Hox 2.2" /codon_start=1 /product="homeobox protein Hox-B6" /protein_id="NP_001090379.1" /db_xref="GeneID:779290" /db_xref="Xenbase:XB-GENE-1006009" /translation="
MSSYFVNSTFPVTLPGGQEPFLGQIPLYSSGYADPLRHYSASYGATGVQDKSYAPGPYFQQASGAYSRTAACDYGAAGFYRDKEVSCALSSLEEQSQYNQEQRKADCAHNKLVYEEQDEAKCATPVYPWMQRMNSCNSSMFGPSGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHSLCLTERQIKIWFQNRRMKWKKESKLLNSSVQSAGEDEEKPTE"
misc_feature order(473..487,491..493,542..544,560..562,599..601, 605..610,617..622,626..634,638..643) /gene="hoxb6.S" /gene_synonym="hox-2.2; hox2b; hoxb6; XlHox-2.2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(479..481,488..490,608..610,617..622,629..631) /gene="hoxb6.S" /gene_synonym="hox-2.2; hox2b; hoxb6; XlHox-2.2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 482..640 /gene="hoxb6.S" /gene_synonym="hox-2.2; hox2b; hoxb6; XlHox-2.2" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" exon 450..1491 /gene="hoxb6.S" /gene_synonym="hox-2.2; hox2b; hoxb6; XlHox-2.2" /inference="alignment:Splign:2.1.0" ORIGIN
caggaagcaccgccgctgcctcctcctcctcctcccaatgagttcctattttgtcaactccactttcccggtaactctgcccggtgggcaggaacccttcctgggacagatcccgttatattcctcaggatatgcggatcctttaaggcattattctgccagctacggggccacaggggtccaggacaagagctacgcgcccggcccgtatttccagcaggcgagtggagcttacagtcggacggcggcgtgcgattatggcgcagcgggattttacagggacaaggaggtttcgtgcgctctttcctcgctggaggagcagtcgcagtacaaccaggagcagcgcaaagcggactgtgcgcacaacaaactggtgtatgaggagcaagacgaggcaaagtgcgccactcctgtctacccctggatgcaaaggatgaactcgtgcaacagttctatgttcgggcccagtggaaggagagggagacagacctacaccaggtaccagactctggagctggaaaaggaatttcacttcaaccgctacttgacccggaggcgcaggatcgaaattgcgcattctctttgcctcaccgagcgccaaatcaagatctggttccagaacaggaggatgaagtggaaaaaggagagtaaactactcaattcctcggtacagagcgcgggggaggacgaggagaagccgaccgagtgacactgcgcctccgactgcgtcaccgcaacattgcgcacttctatccttgtaccttgaataagttattgttgcacacagactggtgaaaggaacctgaatgataatcctccaactacctatatgtctatcactgtctgtctgcaatatccctcctacatgagtacaacacatccagtaaatatcacacacacacacacattgtatataaatatatatatgtacaatcgcacacacacacaataaaagcgcactcctccaggcgtcttgtcccatgcacgatttggcataatcattctcgctgtctattgtgtgtttaattcctatgtctactgaaagtacaatactacctagcaacaaattgtgaccttctctattttatgattattattttttatgtgttggtcgtctgtgtttttttctacgtgtagtttggaaaggactgatgaagtagcagcagcagcagcagcagcagagttaatgtgtactagtgagtgctgctgcccgtgtgtatataggcatctcattgtatcattatacaagtcacttatactggaagcacaagcccaatgtccagtctgtagattttactagagattcccctgaggaccaggactgatcagcttcattaatacacaggctttatcccctgcatcacaaacagcagcagcaacaacctgaatcactaacctgaatcccaacacaagggacaaaattcatctctcctccaattccatccacacgcagctcagtctgggatgtttcattaaatgttattgaaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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