2024-04-20 09:10:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001085680 888 bp mRNA linear VRT 22-MAY-2022 DEFINITION Xenopus laevis ventral anterior homeobox 1 S homeolog (vax1.S), mRNA. ACCESSION NM_001085680 VERSION NM_001085680.1 KEYWORDS RefSeq. SOURCE Xenopus laevis (African clawed frog) ORGANISM Xenopus laevis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus. REFERENCE 1 (bases 1 to 888) AUTHORS Hallonet M, Hollemann T, Wehr R, Jenkins NA, Copeland NG, Pieler T and Gruss P. TITLE Vax1 is a novel homeobox-containing gene expressed in the developing anterior ventral forebrain JOURNAL Development 125 (14), 2599-2610 (1998) PUBMED 9636075 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF064601.1. ##Evidence-Data-START## Transcript exon combination :: AF064601.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN04111048, SAMN04111062 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..888 /organism="Xenopus laevis" /mol_type="mRNA" /db_xref="taxon:8355" /chromosome="7S" /map="7S" gene 1..888 /gene="vax1.S" /gene_synonym="vax; vax1; vax1-a; vax1-b; vax1b; vax1b-a; xvax1; xvax1b" /note="ventral anterior homeobox 1 S homeolog" /db_xref="GeneID:373698" /db_xref="Xenbase:XB-GENE-6252856" CDS 1..888 /gene="vax1.S" /gene_synonym="vax; vax1; vax1-a; vax1-b; vax1b; vax1b-a; xvax1; xvax1b" /note="homeobox protein" /codon_start=1 /product="ventral anterior homeobox 1a" /protein_id="NP_001079149.1" /db_xref="GeneID:373698" /db_xref="Xenbase:XB-GENE-6252856" /translation="
MFEKTTDMDIRCNIEENGRISKPKDNKEIRETQAKMPSTYLKEQPGTYPAPGSSELCAKNKSSSAGDPEYCRRILVRDAKGSIREIILPKGLDLDRPKRSRTSFTAEQLYRLEMEFQRCQYVVGRERTDLSRQLNLSETQVKVWFQNRRTKQKKDQGKDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPGLMPPCTTGTLRAPNSSGPGTRSLATVTSTPPHQPGLHPSPTGHNIFNMPVPSLLGTVANRLSSHPLTMAGNLHELSARYLSSSAFEPYSRSISKDSLDKKLLD"
misc_feature 58..189 /gene="vax1.S" /gene_synonym="vax; vax1; vax1-a; vax1-b; vax1b; vax1b-a; xvax1; xvax1b" /note="propagated from UniProtKB/Swiss-Prot (O93528.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature order(292..306,310..312,361..363,379..381,418..420, 424..429,436..441,445..453,457..462) /gene="vax1.S" /gene_synonym="vax; vax1; vax1-a; vax1-b; vax1b; vax1b-a; xvax1; xvax1b" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 298..462 /gene="vax1.S" /gene_synonym="vax; vax1; vax1-a; vax1-b; vax1b; vax1b-a; xvax1; xvax1b" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:395001" misc_feature order(298..300,307..309,427..429,436..441,448..450) /gene="vax1.S" /gene_synonym="vax; vax1; vax1-a; vax1-b; vax1b; vax1b-a; xvax1; xvax1b" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 607..678 /gene="vax1.S" /gene_synonym="vax; vax1; vax1-a; vax1-b; vax1b; vax1b-a; xvax1; xvax1b" /note="propagated from UniProtKB/Swiss-Prot (O93528.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 1..232 /gene="vax1.S" /gene_synonym="vax; vax1; vax1-a; vax1-b; vax1b; vax1b-a; xvax1; xvax1b" /inference="alignment:Splign:2.1.0" exon 233..420 /gene="vax1.S" /gene_synonym="vax; vax1; vax1-a; vax1-b; vax1b; vax1b-a; xvax1; xvax1b" /inference="alignment:Splign:2.1.0" exon 421..888 /gene="vax1.S" /gene_synonym="vax; vax1; vax1-a; vax1-b; vax1b; vax1b-a; xvax1; xvax1b" /inference="alignment:Splign:2.1.0" ORIGIN
atgtttgagaagacaacagacatggacattaggtgcaacattgaggagaatggaaggatctccaaacccaaagacaacaaggagatcagagagactcaagccaaaatgccctcgacttacctgaaggagcagccgggaacttaccctgcgccgggctcgtctgaactttgcgccaagaacaagagcagcagcgctggggaccccgaatattgcaggaggattctagtgagagatgccaaaggttcaatccgggagatcattttacccaaagggctggatttggaccgacccaagcggagcagaacgtccttcactgcggagcaactgtaccggctggagatggagttccagagatgtcagtatgtggtcggccgagagagaaccgacttatcccgacagttaaatctctctgagactcaggtgaaggtctggttccagaaccgcagaaccaaacaaaagaaggaccagggaaaggactcggagctgcgctcggtcgtgtctgaaacggcagcaacttgcagtgtcctcaggctcctggaacagggtcgtctgctgtccccccccggcctgccaggactcatgcccccctgtacaactggcaccctccgtgcccccaatagctccgggcctggcaccagatcacttgcaactgtcaccagcacacccccccaccagcctggacttcacccttcccccactgggcacaacatcttcaacatgcccgtgccctccctactgggcaccgtggccaaccggctctcctctcacccactgacaatggccgggaacctgcacgaactctcggcccgatacctcagctcctcggcctttgagccctacagccggagcatcagcaaagactcactcgataaaaagctcctggactga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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