2024-04-20 12:00:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001032642 1419 bp mRNA linear VRT 25-JUN-2020 DEFINITION Takifugu rubripes paired homeobox protein (pox1), mRNA. ACCESSION NM_001032642 VERSION NM_001032642.1 KEYWORDS RefSeq. SOURCE Takifugu rubripes (Fugu rubripes) ORGANISM Takifugu rubripes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY071923.1. ##Evidence-Data-START## Transcript exon combination :: AY071923.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1419 /organism="Takifugu rubripes" /mol_type="mRNA" /db_xref="taxon:31033" /chromosome="20" /map="20" gene 1..1419 /gene="pox1" /note="paired homeobox protein" /db_xref="GeneID:445985" exon 1..168 /gene="pox1" /inference="alignment:Splign:2.1.0" CDS 15..1157 /gene="pox1" /note="Pox1; homeodomain" /codon_start=1 /product="paired homeobox protein" /protein_id="NP_001027814.1" /db_xref="GeneID:445985" /translation="
MQHYGVNGYSLHAMNSLSAMYNLHQQAAQQAQHAPDYRPSVHALTLAERLADIILEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAKFRKKQRSLQKEQLQKQKEAAGAPEGSTPDESKTDATGGSAAAAASLPEAHTPPPPSSSSSCHSEARTQPQPGETSVEVNVTSPEPSDSESAAEDNADREEDGMREEARGKTQGDGGVQVDRNSPSCKQLNPSSAAQPAGLAQSNSYASSPLSLFRLQEQFRQHMAATNNLVHYPSFDIGAPSSLPYLGMNVNMPSPLGSLPCQSYYQTLSQAQQVWNSPLLQAAPGGLPGSLNSKTTSIENLRLRAKQHAASLGLDTLPN"
misc_feature order(213..227,231..233,282..284,300..302,339..341, 345..350,357..362,366..374,378..383) /gene="pox1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 219..380 /gene="pox1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature order(219..221,228..230,348..350,357..362,369..371) /gene="pox1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1077..1127 /gene="pox1" /note="OAR domain; Region: OAR; pfam03826" /db_xref="CDD:427530" exon 169..347 /gene="pox1" /inference="alignment:Splign:2.1.0" exon 348..774 /gene="pox1" /inference="alignment:Splign:2.1.0" exon 775..1419 /gene="pox1" /inference="alignment:Splign:2.1.0" ORIGIN
ccaggccggcagtcatgcagcactacggggtaaacggctactctctccacgccatgaattcactcagcgcgatgtataacctccaccagcaggcggcgcagcaggcgcagcacgcacctgactacaggccctcggtgcacgccctcaccctggcagagagacttgctgacattatccttgaggcccgctatggctcccagcaccgaaagcagcgccgcagtcggacggccttcactgcgcagcagctggaggccctggagaagactttccagaagacccactaccctgacgtggtgatgcgcgagcgcctggccatgtgcaccaacctgcccgaagcacgagtgcaggtctggttcaagaaccggcgggccaagtttcgcaaaaagcagaggagcctgcagaaggagcagcttcagaagcagaaggaggcagccggagcgccggaggggtcgacgccggacgagtccaagacggacgccaccggcggcagcgctgctgcggccgcctcgctccctgaagcacacactcctccgcctccttcctcctcctcctcctgccactcagaagcccgcacgcagccccagcctggggagacgagcgtggaggtcaacgtcacctcccccgaaccgtccgacagcgagtcggcagcggaggacaacgcggacagagaggaggacggaatgagagaggaggccagagggaagacgcagggggacggcggagtccaagtggacaggaactccccgtcgtgcaaacagctgaacccttcatcggcagcgcagccagccgggctagcacagagcaactcctacgcctcgtctcccctcagccttttccgcctgcaggagcagtttcgccagcacatggccgccaccaacaacctggtgcactacccctccttcgacatcggcgccccgtcctctttgccctacctgggtatgaacgtgaacatgccgtccccgctggggtcgctgccctgccagtcctactatcagaccctgtcgcaggcccagcaggtgtggaacagtccgctcctgcaggcagcgccgggcggcctcccggggagcctcaacagcaagaccaccagcatcgagaacctccgtctgagggccaagcagcacgcagcatcgctgggattggacacactgcccaactgaagcgtgggccgcccggcgagcgtgctcaccctccggtcagagcctcgtgtagacgacaggccgcggcaaaactttggttttctctcctcacaactgacctcacaaggccgctcgctccaaacacacaaactgtctccccattagcctgtggtaaatgattgtgtctgcttcttgtaatttatttttcttaaaaaaaaagagagagagagagagaatgacatcttacttgcagattatttaaattttaataaaaccaacagca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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