2024-04-27 04:30:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001003049 3299 bp mRNA linear MAM 18-JUN-2021 DEFINITION Canis lupus familiaris cone-rod homeobox (CRX), mRNA. ACCESSION NM_001003049 VERSION NM_001003049.1 KEYWORDS RefSeq. SOURCE Canis lupus familiaris (dog) ORGANISM Canis lupus familiaris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. REFERENCE 1 (bases 1 to 3299) AUTHORS Akhmedov NB, Baldwin VJ, Zangerl B, Kijas JW, Hunter L, Minoofar KD, Mellersh C, Ostrander EA, Acland GM, Farber DB and Aguirre GD. TITLE Cloning and characterization of the canine photoreceptor specific cone-rod homeobox (CRX) gene and evaluation as a candidate for early onset photoreceptor diseases in the dog JOURNAL Mol Vis 8, 79-84 (2002) PUBMED 11951083 REMARK Publication Status: Online-Only COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF454668.1. ##Evidence-Data-START## Transcript exon combination :: AF454668.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..3299 /organism="Canis lupus familiaris" /mol_type="mRNA" /sub_species="familiaris" /db_xref="taxon:9615" /chromosome="1" /map="1" gene 1..3299 /gene="CRX" /note="cone-rod homeobox" /db_xref="GeneID:403577" /db_xref="VGNC:VGNC:39632" exon 1..67 /gene="CRX" /inference="alignment:Splign:2.1.0" exon 68..202 /gene="CRX" /inference="alignment:Splign:2.1.0" CDS 103..1002 /gene="CRX" /note="photoreceptor-specific cone-rod homeobox protein; crx gene for cone-rod homeobox protein" /codon_start=1 /product="cone-rod homeobox protein" /protein_id="NP_001003049.1" /db_xref="GeneID:403577" /db_xref="VGNC:VGNC:39632" /translation="
MMAYMNPGPHYSVNALALSGPSVDLMHQAVSYPSAPRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKEQPQPPGAQTKARPAKRKAGMSPRSSSDVCPDPLGISDSYSPPLLGPSGSPTTAVATVSIWSPASESPLPEAQRGGLVASGPPLTSTPYAMTYAPASAFCSSPSAYGSPSSYFSGLDPYLSPMVPQLGGPALSPLSGPSVGPSLAQSPTSLSGQSYGTYSPVDSLEFKDPTGTWKFTYNPMDPLDYKDQSAWKFQIL"
misc_feature order(220..234,238..240,289..291,307..309,346..348, 352..357,364..369,373..381,385..387) /gene="CRX" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(226..228,235..237,355..357,364..369,376..378) /gene="CRX" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 229..387 /gene="CRX" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:395001" misc_feature 376..564 /gene="CRX" /note="propagated from UniProtKB/Swiss-Prot (Q8SQ03.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 598..849 /gene="CRX" /note="Otx1 transcription factor; Region: TF_Otx; pfam03529" /db_xref="CDD:397546" misc_feature 808..873 /gene="CRX" /note="propagated from UniProtKB/Swiss-Prot (Q8SQ03.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 203..354 /gene="CRX" /inference="alignment:Splign:2.1.0" exon 355..3289 /gene="CRX" /inference="alignment:Splign:2.1.0" ORIGIN
ccacctgaggactctgactccaaccaggtcctgggccaccaggagagcctgaccctgtttttggaaggcccgcagacctgggccacagtatccccaaagatcatgatggcgtatatgaacccggggccccactactcggtcaacgccttggccctcagcggtcccagcgtggatctgatgcaccaagctgtgtcctatccaagtgccccaagaaagcagcggcgggagcggaccaccttcacccggagccagctggaggagctagaggctctgttcgccaagactcaatacccggatgtgtatgctcgagaggaggtggctctgaagatcaacctacctgagtccagggttcaggtttggtttaagaaccgcagagctaaatgccggcagcagcgccagcagcagaaagagcagcctcagccccccggcgcacagaccaaggctcgtcctgccaagaggaaggcaggcatgtccccaagatcctcctccgacgtctgtccagaccccctaggcatctcagactcctacagcccccctctactcggcccctcaggctctcctaccacggccgtggccaccgtgtccatctggagtccagcctcagagtcccctttgcctgaggcccagcgcggagggctggtggcctcggggccacccctgacctccacaccctacgccatgacctacgcccctgcctctgctttctgctcctccccttcggcctacgggtctccgagctcctatttcagtggcctggatccctatctttcccccatggtgccccagttggggggcccagccctcagccccctttcaggcccctccgtgggaccctccctggcccagtcccccacttccctgtcaggccagagctatggcacctatagccccgtggacagcttggagtttaaggaccccacagggacctggaagttcacctacaaccccatggatcctctggactacaaagatcagagtgcctggaagtttcagatcttgtagaagatcctcttctgtatgtctctctgcatctcatctcaacccggcatccccaggaaagcagtggggctggccctccctccaaaagttgtggcctctctggcctcatgtgtggagtagcccaccacagtccacccccctctccccgggacagtctcctcactctccggggaagttcaatagatcttagtaaccctccacccagccccgcctcaccatggatgctggctgccattttaaccatgagccctggactccagaaactggtgctatgaatgtgctctgagatgaaattaaaccaaattcaagtagtcagtttaggggtcctggtcaggtcagaatcgagatgccctggaacagacaggtagggagactcaatgtcataccttccatttgggacacttccttagcatgtggctaggatccttctagaaaatccaaagatagttttaagaagccccaccatggcagcttaggtcagttgtacagttcaattaaaaaatccatttggcgattttacagatttcccaaatatcaagtttacatggtaggtttagggggctctttgatatatatttttttctttttagtttcttcttaaagacatttcgtcaggaatgcattcttttggactttgagagtggccatgtttggntttgttttaggattttctaaaggtggatttcaccccagcgctggaggaactgtggtagttgccactggggccaaccatggtagttggctccaacatagctgtgggtatatcaaaaaaaagaagaacaggaggtggcaggcttctcatttgtaaatatgcaagagacgaggttggcgggataagtggatttggaacaagccccacatttcaaaaatacagtccctctcttagattttgtttccattgcaggatgggaccagagagcgcagcctgatggagtggcaccatatttctttctgtgcgttgacccccagtgacagagacaagcactgagagacttttaagatggagtcaggcattttaacactcttggtagtttgatgctttggccttgcttgaattttttttttttttttttttttttttgtctttggccctgggaggcagtagccacgagcctttcactggtgggcttcacaaggtaaaaggaagtagggcaggaaggtggtggtgtgctggtatgtggtaaccattggctccctaaaagaagaggaaaaaccttgatttgtagtgattgccaatttctgtggtgtaaattatcccactatggctgatttcaaggcaccaagtctgtggtcatggcctcggagctggatgcatgccatctgtgctcatgggctggtaggaactggttccaggtcgccggtgtaggaagggatgtcaggaggcaggcacagtgtggagagaggctgggaggcctcagatggatttttctgggtccaggccagaagaggtccatatggactagaccccccaagaccctctgaaggggcacacggcggatcactggaatcctcaaggatggtttactcagcacaccacatgaccatgtctcatgggcctgagtcatactggcctctgggacattagacccaggagtgagtggctcagagtccagtgtgggacacaaaggataaacagaggaggacagtgcaggtgggggtggaagatagacgatccaagcagaatccgcagnngagggacagggaggaggtgacattgtgtaaaagttgggaccagatgcactgccattgattcattttgcagagactcccagagtctgtgctggaggnnggggtctcaggagtacataggaatttctctctgccccacggagctcccagagctctggttcacngnngagggtgtgtcttgtgaacacgaacaattcacaggcacgctgataagggggtccgggagagcatgaaggatggacgtcatgttctggaggagggtggaaggtgtagagcctggggggccacagtcacaggcccacaggctcagatgtcaggagacccctctcgctagggctggacagagcaagagggtgcatttgttcgggaggtcctggcttcctttcccggggccaacctcctgagctgtggggatgtcaaaggttctacttctttgagacaaaaagccaggacaagtgacaagagagagaaggaagcggccaggagcccccttcactctgtgttccctcccccactccttgagactccagtccccttccttccaggacaaccaccccccaccccaagcgaaaataattaaattgttgaatctcgctaaaaaaaaaaaaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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