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2024-03-29 15:03:28, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Danio rerio vimentin (vim), transcript variant X1, mRNA. (1905 bp)
LOCUS XM_021470110 1905 bp mRNA linear VRT 15-JUN-2017 DEFINITION PREDICTED: Danio rerio vimentin (vim), transcript variant X1, mRNA. ACCESSION XM_021470110 VERSION XM_021470110.1 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007135.7) annotated...
Synonym: cb28
XM_021470110.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio vimentin like (viml), mRNA. (1680 bp)
LOCUS NM_200773 1680 bp mRNA linear VRT 27-DEC-2022 DEFINITION Danio rerio vimentin like (viml), mRNA. ACCESSION NM_200773 XM_697268 VERSION NM_200773.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC059604.1. On Jul 6, 2005 this sequence version replaced XM_697268.1. ##...
Synonym: zgc:73275
NM_200773.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio vimentin (vim), mRNA. (1824 bp)
gene="vim" /gene_synonym="cb28" /inference="alignment:Splign:2.1.0" exon 1026..1246 /gene="vim" /gene_synonym="cb28" /inference="alignment:Splign:2.1.0" exon 1247..1290 /gene="vim" /gene_synonym="cb28" /inference="alignment:Splign:2.1.0" exon 1291..1373 /gene="vim" /gene_synonym="cb28" /inference="alignment:Splign:2.1.0" exon 1374..1797 /gene="vim" /gene_synonym="cb28" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1824) AUTHORS Aragona M, Porcino C, Briglia M, Mhalhel K, Abbate F, Levanti M, Montalbano G, Laura R, Lauriano ER, Germana A and Guerrera MC. TITLE Vimentin...
Synonym: cb28
NM_131872.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio selenoprotein S (selenos), mRNA. (3735 bp)
CU856378.10 17990-18079 c 564-636 CU856378.10 17849-17921 c 637-3735 CU856378.10 13445-16543 c FEATURES Location/Qualifiers source 1..3735 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="7" /map="7" gene 1..3735 /gene="selenos" /gene_synonym="sels; vimp; wu:fc16a03; zgc:136970" /note="selenoprotein S" /db_xref="GeneID:735249" /db_xref="ZFIN:ZDB-GENE-060804-1" exon 1..231 /gene="selenos" /gene_synonym="sels; vimp; wu:fc16a03; zgc:136970" /inference="alignment:Splign:2.1.0" misc_feature 144..146 /gene="selenos" /gene_synonym="sels; vimp; wu:...
Synonym: sels; vimp; wu:fc16a03; zgc:136970
NM_001045334.3 - Danio rerio (zebrafish) - NCBI - UCSC

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/dr/symbol%3aVIM
lang : en | div : | spe : dr | query_string : symbol:VIM | format : html | download :

0.000 | 0.000 | search_start;
0.143 | 0.143 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(full_search:symbol,synonym:VIM)?source=Danio rerio (zebrafish)?to=0&format=json
0.227 | 0.084 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(full_search:symbol,synonym:VIM)?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.228 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]