Acknowledgement: We thank Mr. Masamichi Chichii for making the tutorial video on TogoTV.
Search words | Description | Alias |
---|---|---|
refid:NM_001518 |
Search by RefSeq ID. Version number following a dot is ignored: [ refid:NM_003380.2 ] and [ refid:NM_003380 ] will return the same results. Words starting with NM_, XM_, NR_, or XR_ is automatically treated as refid: search without operator. |
refseqid: refseq: id:NM_ id:XM_ id:NR_ id:XR_ |
geneid:10579 |
Search by Gene ID. An integer is automatically treated as geneid: search without operator. |
gene:integer id:integer |
symbol:VIM |
Search for gene symbols and synonyms which partially match to the query. For example, query EIF2C will return EIF2C1, 2, 3, and 4. |
name: gene:word |
aa:KDEL | Search for amino acid sequence. | |
ref:Naito ref:1327585 |
Full text search within cited references. PubMed ID can also be queried. |
reference: |
probe:1552311_a_at probe:A_23_P101434 |
Search for nucleotide sequences by microarray probe ID. Words ending with _at, _st (Affymetrix ID) and starting with A_ (Agilent ID) are automatically treated as probe: search without operator. When probe ID is not converted into sequences, the probe ID is subjected to a basic search. |
probeid: |
seq:caagaagagattg |
Search for nucleotide sequence. Query containing letters A,T,G,C, and U only will automatically be treated as seq: search without the operator. U and T will be treated identically. 1-, 2-, and 3-nucleotides mismatch tolerance. |
sequence: |
comp:caagaagagattg | Search for complementary sequence. with 1-, 2-, and 3-nucleotides mismatch tolerance. |
complementary: |
both:caagaagagattg | Simultaneously retrieve sense and antisense nucleotide sequences corresponding to the query. 1-, 2-, and 3-nucleotides mismatch tolerance. |
bothseq: |
iub:aggtcannrtgacct iubcomp:aggtcannrtgacct iubboth:aggtcannrtgacct |
Search for nucleotide sequence containing IUB code letters (i.e. N, R, Y, ...). iubcomp: will return complementary sequences to the query; iubboth: will return both strands. |
iubseq: → iub: |
If you use GGRNA in your work, please cite GGRNA paper.
Last modified on Mar 30, 2023 by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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