LOCUS       XM_021481330             730 bp    mRNA    linear   VRT 15-JUN-2017
DEFINITION  PREDICTED: Danio rerio ribosomal protein S5 (rps5), transcript
            variant X1, mRNA.
ACCESSION   XM_021481330
VERSION     XM_021481330.1
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007126.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Danio rerio Annotation Release 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="15"
     gene            1..730
                     /gene="rps5"
                     /gene_synonym="chunp6933; fc74e05; fj57h03; wu:fc74e05;
                     wu:fj57h03"
                     /note="ribosomal protein S5; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 262
                     ESTs, 35 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 148
                     samples with support for all annotated introns"
                     /db_xref="GeneID:192297"
                     /db_xref="ZFIN:ZDB-GENE-020419-12"
     CDS             64..678
                     /gene="rps5"
                     /gene_synonym="chunp6933; fc74e05; fj57h03; wu:fc74e05;
                     wu:fj57h03"
                     /codon_start=1
                     /product="40S ribosomal protein S5 isoform X1"
                     /protein_id="XP_021337005.1"
                     /db_xref="GeneID:192297"
                     /db_xref="ZFIN:ZDB-GENE-020419-12"
                     /translation="

MAEDWEAAPAVAETPEIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSSGRYAAKRFRKAQCPIVERVTNSMMMHGRNNGKKLLTVRIVKHAFEIIHLLTGENPLQILVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR"

     misc_feature    115..675
                     /gene="rps5"
                     /gene_synonym="chunp6933; fc74e05; fj57h03; wu:fc74e05;
                     wu:fj57h03"
                     /note="Eukaryota homolog of Ribosomal Protein S7; Region:
                     uS7_Eukaryote; cd14867"
                     /db_xref="CDD:271246"
     misc_feature    order(115..117,202..210,214..225,322..324,334..336)
                     /gene="rps5"
                     /gene_synonym="chunp6933; fc74e05; fj57h03; wu:fc74e05;
                     wu:fj57h03"
                     /note="S9 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271246"
     misc_feature    order(214..216,220..222,232..243,250..252,274..276,
                     283..285,289..303,313..327,334..336,454..462,466..468,
                     496..498,517..519,538..540,547..549,565..570)
                     /gene="rps5"
                     /gene_synonym="chunp6933; fc74e05; fj57h03; wu:fc74e05;
                     wu:fj57h03"
                     /note="rRNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:271246"
     misc_feature    order(346..348,355..360,367..369,565..567,571..576)
                     /gene="rps5"
                     /gene_synonym="chunp6933; fc74e05; fj57h03; wu:fc74e05;
                     wu:fj57h03"
                     /note="S25 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271246"
     misc_feature    order(451..453,460..462,466..468,673..675)
                     /gene="rps5"
                     /gene_synonym="chunp6933; fc74e05; fj57h03; wu:fc74e05;
                     wu:fj57h03"
                     /note="S11 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271246"
ORIGIN      

gcctgctcgagtgcgccattcacacacacgctgcgaagaaatattctttattttcctctaaagatggctgaagattgggaggctgcaccagctgttgctgaaacaccagagatcaaactctttggcaagtggagcacagatgatgtacagatcaatgacatctccctgcaggattacattgccgtgaaggagaaatacgccaaatacctccctcattccagcggcagatacgcagccaagcgtttccgtaaggctcagtgtcccattgtggagcgcgtcactaactccatgatgatgcacggacgcaacaacggcaagaaactgctgaccgttcgcatcgtcaagcacgcttttgagatcatccacctgctcactggcgagaatcctctgcagattctggtaaacgccatcatcaacagtggccctcgtgaggactccacccgtatcggacgtgctggaaccgtgaggagacaggctgttgatgtgtcccccctgcgcagagtcaaccaggccatctggctgctctgcactggtgcaagagaagctgctttcaggaacatcaagaccatcgcagagtgtcttgctgacgagctcatcaacgctgccaagggttcctccaactcttacgccatcaagaagaaagatgagctggagagagtggccaagtctaaccgctaatctccattttgtataaaatcggattacattaaaagaggaagagttaaaccta

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