2024-11-01 07:56:03, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_021480466 7659 bp mRNA linear VRT 15-JUN-2017 DEFINITION PREDICTED: Danio rerio trinucleotide repeat containing 6b (tnrc6b), transcript variant X1, mRNA. ACCESSION XM_021480466 VERSION XM_021480466.1 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq; includes ab initio. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007123.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..7659 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="12" gene 1..7659 /gene="tnrc6b" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 52 ESTs, 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:321362" /db_xref="ZFIN:ZDB-GENE-030131-13" CDS 1..6021 /gene="tnrc6b" /codon_start=1 /product="trinucleotide repeat-containing gene 6B protein isoform X1" /protein_id="XP_021336141.1" /db_xref="GeneID:321362" /db_xref="ZFIN:ZDB-GENE-030131-13" /translation="
MYITTISPGSLTKEHQEREQQFMEDKKRKKEDKRKRETSQKVAEQKNKVPELTKPPSAQSPAAPNSASPSPGPVPSSTPSAATPAAGTLPQGGNNAKRPAVANGQPSPSTPNSQRYMPREVPPRFRCQQDHKVLLKRGQPPLSSMLLGGGNSGGDSPNETVASASDPSQGPVGPAAPSLPHTSSASSIAASSSSNYANSMWGTSSGSHPLSQGREKVIVDRSDLEEWPSIAAGDGSKSGDAAGTGGTDSGAILNCNASWGERHLQQQAKVVGGGNGRKGVNSGSSSPPTSSGSPNECMQSGSVWASSSHELIGGNAVAAGSLPPISKAAPLPGSSDSSFGVSCGIPGANFTPNANPSAWPALVQEGAGTVATEGGSSSLQSSSLSASNPLSVNQASHQHQLHQMQSRDREPSCGEWGGTALEPGAGPKNTGVTEGADMDSGSTGGGAGSASSSSSTSSSLWRTQPFPANFKTGASRTESWDDGAGGSSLSAESGKAWGYPGQDDRGDLTGAGAWGTGSGGQTPGVSQGAWGGDHLLGGEWGASSGVGGVSDQGGKDGSSSNSSSSGGSVSIPTTTSSTPSTMTRAWDNQKAVGDVGAGDLSEWGGQGSRGGEGTSSSSGGGNSRSGNQRHGHHRTHKPPDPEVALQDLLSRSDLDPRVLSNTGWGQTQIRQNVAWDLEDGGRAKAPGGANSLSIGSSAHAQPYSGPSGSTTTDPSSPSLLQAASLNANLNSNSILGPPAVSSGEGWDNSSSNSSSLHTRGPPPSGVNIQNPSVSQSGGGGGSSAGGQGMPSGGWGGTASSEGQVKGWESEGHEWRERRAGGSSGGWGDFQTQGTPSTGGSGWGDSQEEKGTRSSGWKEMGRVDAGSWGPRGTSDWGEKESKSCSGGWDGKGGGGTSGDSEVGTWGNWDDGTPGGTWGGVGGDMGGKSHQGWGGKMHPSQMPNSQSASQKGPAQQQQQPQSQPQQCQSVDTGAMQGGWGRPAGPSVQSQSSGWNSGPIPQISNGPGETSEPSGWEEPSPQSISRKMEIDDGTSAWGDPSNYNYKSVNLWDKNNAPSGQAQSVSPQQGPPPLQQPPPGRMPTGLGNRDMNIAHSASKGPGIASGWGGRGSPSSPCVDNGTSAWGKPTEAPTGWDDSGKASSWGDPSSNPVKSGSKSMQEGWVEGEGSVSASRNPSWEEEDESGGVWNSAGSQGSSSSYNSGGWGAKKGNKGSLKGAGDSWMNPMSRQFSNMGILGEDAGGRSLDLAPGPPQDKKMEGEKRGMGLNEYNGEMRKGGRGGGAGAVFRSPGSKEVGACEPGPYYDKASGQLFSSGGGMAQSRHQPGVPPINPSVRAQVPHQFLSPQVPGSVLKQMPPPSGGVGGGIFPPQLSPQHIAMLSSIYPPHLQFQLACQLLLQQQPQQQQQQQLLQNQRKFPPNIRQQADPQQLARIMAVLQQQRQQQQHVGGTGGSSKLSPSHLGGSGPKMPMSDPLSHPGLAGSVADLHQKTQGAYSGFGPGMSLSGLELGPMVGGPAGLKDSGGQQSRFKWMMEGHSPAPSPPDSTLHKNGPIAAPLKMRGGSPYSQYEMLGGGEGLGVPPQGPSDHWHRSPGNKMGTKTGTSSWPPEFQPGVPWKGRPNVDTDSDPYMTPGSMLGSSMSSLNDTEHQLLRDNTESNPSLNTLLPSPGAWPYSASESPLTNAHNPAKYTDYKPSWPPEPIGHNKPWKTNRNNSHLPRPPPGLTHQKQPSVSPWTSGGPRVGRGWGGSGGSQENRFGPGSAWSDGGASKGSCWLVLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTQGSALIRYSSRQEAAKAQSALHMCVLGNTTILAEFVSEEEVARYFAHSQAGAAGSGSGGSGAGGVAVSGPAGVAGSSGAGAVGTISAASGDRERAAVGSLTAGGSSNSGGTGPSGSTWQSLDGTGSSSDPASAQGAGLSIFAQWSSNGAGGSNAAGVDPGRAGLWGGMTPGYTGSSLWASPAMEDRHQMNSPAALLPGDLLGGGADSI"
misc_feature 3343..>3555 /gene="tnrc6b" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 4465..5283 /gene="tnrc6b" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5287..5535 /gene="tnrc6b" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN
atgtatatcacgactatcagtccaggctcgctaacaaaggagcaccaggaaagggaacagcagttcatggaagacaagaaaaggaaaaaggaagataaaaggaaacgggaaacctcgcagaaggttgcagagcaaaaaaataaagtgccagaattgaccaagcctccatctgcacagtctcctgccgcccccaactcagcttcccccagccctggccccgtcccctcttcaaccccatccgctgccaccccggctgctggcaccctccctcagggtgggaacaatgctaagcggccggcggtggccaacggacagccctcccccagcacaccgaattctcagcgctacatgccccgtgaagtgccccctcgattccgttgccagcaggaccataaagtgctactgaagaggggccagccaccactgtcctccatgctgctggggggaggcaacagcgggggagacagccccaatgaaacagtggcttctgcctcagatccaagccagggccctgtgggtccagctgctccctcactgccccatacgtcatccgcctcatcaatcgctgcttcttcttcttcaaattatgcaaattccatgtgggggaccagctctggcagccatcccctctctcagggcagggaaaaggtgatagtggaccggtcagacctggaggaatggcccagtattgctgctggggatggatcaaagtcaggggatgcagcaggtacaggaggtacagacagtggtgcgattctgaactgcaatgcctcgtggggtgagaggcatctccagcagcaagcgaaagttgtgggaggagggaatggaaggaaaggagtcaattctggcagttcctctccgcccacatcctctggatcacccaatgaatgtatgcagtctggtagtgtttgggcttcatcctcccatgaactcataggggggaatgcagtagcagcaggctcattgccccccatatccaaagctgcccctctcccagggagctctgatagctcctttggtgtcagctgtgggattccaggtgccaattttacccctaatgccaatccctctgcttggccagccctagtacaggaaggggctgggacagttgcaacagagggtggctcctcttccctccaaagctcatctttgtctgccagcaaccctctttctgtgaatcaagcctctcatcagcaccaacttcaccaaatgcaatccagagacagagagccatcctgtggagaatggggtggcacagcactggaaccaggagcaggaccaaaaaacactggggtgacagagggggctgatatggactctggaagcacaggtggaggagcaggctctgcttcgtcttcctcctccaccagctcatcattgtggagaactcagcctttccctgcaaacttcaaaacgggtgcctcaaggactgaatcttgggatgatggagcaggagggagctccttgtctgctgaaagtgggaaggcatggggatatcccggccaggacgatcgaggagatttgacgggggcaggtgcctggggaacaggaagtgggggtcagacccccggggtatctcagggagcgtggggtggggaccatttgttgggtggggaatggggggcatccagtggtgttggaggtgtcagtgatcaaggtgggaaagacggctcaagcagtaacagcagcagtagtggcggtagtgtcagcatcccgacgacaacctcctccacaccttcaactatgacaagagcttgggacaatcagaaagcagttggggatgtgggagcaggagatttgagtgagtggggaggccagggtagcagaggtggggaaggtacctcatcctccagtggtggaggaaactccagaagtggcaatcagcgccatggccaccaccgcactcataagcctcctgaccctgaagtggccttacaggatctgcttagccggtcggatctggaccccagagtgctgtccaatactggttggggtcagacacaaatccgtcagaatgtggcatgggatttggaagatggaggcagagcaaaagcaccaggtggagcaaattccttatctattggttcatctgctcatgcccagccatactctggtcctagtgggagcacaactactgatccatcttccccctctctgctccaagctgcatctctgaatgccaacttaaactcaaactccatccttggaccacctgcagtttcatctggtgaaggttgggacaacagtagtagcaacagcagttctttgcatacccgaggccctccaccctcaggtgtcaatatccaaaaccctagcgtctcacaatctggaggtggaggaggtagctcagctggtgggcagggcatgccatctgggggttggggagggactgcatcatcagaaggccaagtaaagggctgggaaagcgagggacatgagtggcgagaacggcgagcaggaggttcgtcaggtgggtggggagatttccaaacacagggtactccatcaacaggaggaagtggctggggagatagtcaggaggagaaaggaacaagatcaagtggatggaaagaaatggggagggtggatgcaggcagctggggaccgagaggtaccagcgactggggagaaaaagagtctaaatcgtgtagtggggggtgggatggaaagggtggtggaggtactagtggagactcagaagtgggtacatggggtaattgggatgatggaactcctggagggacatggggaggggtgggtggagacatgggtggaaaatctcaccaaggttggggtgggaagatgcacccttcacaaatgccaaacagccaatcagcctcacagaaaggcccggcacagcagcagcagcaaccacaatcacagcctcagcagtgtcagtcagtggacacaggggccatgcaagggggctggggaagaccagcaggtccttcagtccagagccaaagttcagggtggaattcagggcctataccccaaatttccaatggccctggagagacttcagagcccagcggttgggaggagccttctccacagtccatcagcaggaaaatggaaattgatgatggaacatctgcttggggtgaccccagcaactacaactacaaaagtgtcaacttgtgggataaaaacaatgccccatctggccaggcacaatcagtgtcccctcagcagggccccccacccctgcaacagccgccaccaggaagaatgccaacaggtcttgggaatagggacatgaacattgcacattcagcaagcaaggggccaggaatagcttctgggtggggaggtcgtggctctccttccagtccttgtgtggacaatggtacttcagcctggggtaaacctactgaagctcccactggttgggatgacagtggcaaggcctcaagttggggggatccctcatccaatccagtgaagtctggttcaaagtctatgcaagaaggttgggtagaaggagagggttcagtcagtgcttcgcgtaaccctagctgggaggaggaggatgagagtggtggtgtttggaatagtgctggttcccaaggcagcagctcttcatataattctggaggctggggagccaaaaagggcaacaagggctccttgaagggtgcaggagattcttggatgaacccaatgtcaagacagttttcaaatatgggaattttgggagaggacgcaggtggccgttccttggatttggcccctggtcctccacaggacaaaaagatggaaggagagaagcgtggcatgggcttaaacgagtacaatggagagatgcgtaaaggaggtcgtggaggtggggcaggagcagtcttccgttcacctggttccaaagaggtgggagcttgtgaacctgggccttactatgacaaggcaagtggtcagttgtttagtagcggaggagggatggcacagtcaaggcaccaaccaggggtgccacccatcaacccatcagtgcgagcacaagtgcctcatcagttcctgtcacctcaggtgccaggctctgttctgaaacagatgcctcctcccagtggaggtgttgggggaggcatctttcctccacagctttcccctcagcacattgccatgctcagcagcatctacccaccacatcttcagttccagctggcctgtcagctcctactgcaacagcaaccgcagcaacaacagcagcagcagctgttacagaaccagcgcaagttccccccaaacatacgacaacaagcagacccccaacagctggccagaatcatggctgttcttcagcagcaaagacaacagcagcagcatgtgggaggtacagggggcagctccaaactctctccttctcatcttggaggaagtggcccaaagatgccaatgtccgaccccctttcacaccctggcttggcaggatctgttgcggacctacatcagaaaacacaaggagcttactctgggtttgggcctggaatgagtctctctggtctggaattgggtcccatggttggtgggccagctgggctgaaagacagtggggggcagcagtctcgtttcaaatggatgatggaaggccattctccagcaccttcacctcctgatagcactcttcataaaaatggtcccattgctgctcctcttaaaatgagaggtggttccccgtattcccagtacgagatgctaggaggtggtgagggtttaggtgttcctccacaggggccatcagatcactggcacagaagtcctggaaacaaaatgggcaccaaaactggcacatcaagctggcctccagagtttcaacctggagtgccttggaaaggacgtccgaatgtggacactgactctgatccctacatgacccctggaagtatgttgggttcatcgatgtcaagcctcaatgacactgagcatcaactgctaagagacaacacagaatcaaatccctccctcaacaccttgctgccttcacctggtgcctggccctacagtgcctcagagagccccctaaccaatgcacacaatccagctaagtacacagactacaagcccagctggccacctgagccaatagggcacaacaagccttggaagaccaatcgcaacaactctcatctgccacgcccacctcctggactgacccatcagaagcagccttcagtttctccctggacgagtggaggcccacgagtgggtagaggatggggcggctctggaggcagccaagaaaacagatttgggcctggttctgcgtggagtgatggaggagcctctaaggggagctgctggctggttttgagtaatcttacccctcagattgatggctccactttgaggactatctgtatgcagcatggaccgcttttgacctttcacctcggtttgacccaaggtagtgctctaattcgctacagctctcgccaagaagcagccaaagcccagagcgcacttcacatgtgtgttttaggtaacaccacaatcctggccgagttcgtaagcgaagaggaggtcgctcgctattttgcacattcccaggccggagcagctggaagcggcagcggagggagcggggccggcggtgtggccgtctcagggccggcaggtgtggcgggatcatcaggggctggagccgtgggtacaatcagtgctgcgagtggtgaccgagaacgtgccgcagtaggaagtctaacagcaggaggaagcagcaacagtggtggaaccggcccctcaggctctacgtggcagagtttggatggtacgggcagctcgtctgacccagcctcagcacagggagcaggcctgagcattttcgcccagtggagcagcaacggtgctggtggcagcaatgcagcgggcgttgatcccggaagagccgggctgtggggcggcatgactccaggctacacaggcagcagtctgtgggcttcaccagccatggaagatcggcatcagatgaacagtcctgccgcgctgctacccggagacctgctaggaggaggtgcagactcaatctgactgatgcagacacttacagacaaataaaaacacacacgcacacacatgacagatatataaatataaccgttatgttatctcaaacacacgcaggaacacattaatacgaatacaggcggtttatgtatatggcctctgcaactcagacagccacataacgcataaatatacaacaaaatatttagtatacattcgtaacacctatgtagaccagattcagtgataagcactcaaacagcagatgccaggtaaacacttaaggagcagatccactgcattaccaaacctagcaaaacgcattaagatgaaattgttaatgacactggttacaaatgtacacacactgttattattattattaatattattattttttacctgagcagtgttttaagctcctcgtaaatctaatgttggtaggagcgcagaggagcagtgtgtggacataaggcagtactgatagacacgcgcacacacatatagatacacacacacacacacactcatttcttcttattcttaaatgaagacttcagcaagacttgaacaggacatgcaaacagttggacttaaatactgactcaactggatgaatcctaaaccttgaggtcataaagatcacactcgcatactgagacgctctcactcaggcgtgcactgtaaaggaaaaagcagacaaaaaacaaaacaaaggacaaaaatatgcatcatacaatgttcgttgaacgctcgcgttgttacggctccatttccatgcagacttaaattactcaaacactgttctgatgtctgacaaactgtaacttctcgttgtcttttttatttttgttttttggtttgttttaaatgatggtgaaatccagaatttgttttttttccaaaaaaaaaaaaaaaaaaaacgctgacctcggttttttttttctttcttcttaatcgagtatgttgtcataatgacgatcacttggatgttacttagctgtacaaggtgccctttctgcctgtgcgtgcatgagtgaagtcccaggtgatggaggcgacgttcctagtgttttgcgaggcatcgatgaatgtgtggcagccagagattaacaagcgtggtgtatttacaaagatcagtgctggattagggaggtgagtaaatgtatgagtgacagctttatttcaggtgtttgatgtctatgtgtgcatgatatgtatgcagctgtggctgtgagtgtgtgtgtgagagtgagcgagtgtgtgtagacagcaagttcaagaacattggcactaatgaatatttcttaagttgtggttttagcagccttttctgttttatatattgtctgaattgcaataattataataaagaaaaaaagatttttttagaagatgcaaccaactgaaggcattcatactgaaacatgaaacatgccaaaccttattgtaccaagctgagctggatatatgggtgttttaggaacacttaaaaagtaccagttgtttatttttgttgttgtgtaccattataaattaaggcgggctttatcactcgtgttcaggttttttttctgtttgtttgtttctgattttacaaaagaaattaatttaaaaaagaacaagacaattaataaaggttgaatttaatttcgttgtcaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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