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2024-05-05 19:21:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_021472515            1924 bp    mRNA    linear   VRT 15-JUN-2017
DEFINITION  PREDICTED: Danio rerio shisa family member 8b (shisa8b), mRNA.
ACCESSION   XM_021472515
VERSION     XM_021472515.1
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_018394835.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Danio rerio Annotation Release 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1924
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="12"
                     /map="unlocalized"
     gene            1..1924
                     /gene="shisa8b"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 16 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:101882404"
                     /db_xref="ZFIN:ZDB-GENE-130603-87"
     CDS             249..1544
                     /gene="shisa8b"
                     /codon_start=1
                     /product="protein shisa-9"
                     /protein_id="XP_021328190.1"
                     /db_xref="GeneID:101882404"
                     /db_xref="ZFIN:ZDB-GENE-130603-87"
                     /translation="
MKILALKKQSMAGNYFLLHLLLTAFLGRAAKAQDETSTDMDIQTANHTVDPLMISVTSDGPPTLTTPGEVEEDTVPSTGTRCRGYYDVMGQWDPPFNCNAGIFLYCCGTCFYRFCCQFRQQRLDQTSCSNYDTPIWANTGKPVATNTEVQPDHERDRTHMIVYIICGVVAIMVLVGIFTKLGLEKSRGGQNDLSNSRTLQELMKQPGGEANAVDGPLSNSSSIGANGISARMLRSRSEQYHLNNAGFSFGALAGLSHPQSNLSIPGLALNKYNSLKAVADTANRSYYKSYPLMDFSQHHSPPVAFQPMPMHPKDKSYLHQVLPSHDIHSPLSISIPTNHMERTRIPKTITHPQLSSSAFKAWDSGRRHVHRQTSHPGHLPRRQTYSSRRQYSIETIPDFLSQPTGYGGQPLYQHHPKIKAYQTNSKTEVTV"
     misc_feature    492..>869
                     /gene="shisa8b"
                     /note="Wnt and FGF inhibitory regulator; Region: Shisa;
                     pfam13908"
                     /db_xref="CDD:433573"
ORIGIN      
tctgaactgttgcccttcacaaggctcagaggcagcactctgagtggatcgctgtggattaaaacacctgtctgtgggttcaatcattcttaaaaaaggaatttttatggcaaattttttatgactggttgtttacagaggtgaagaggaaggaagttttactactggagagcacaaagaacaagttttaaactacatggggaaaacaaaataacgcatttctggacaggaccagagtaagacaacaaatgaagattttagctctcaaaaaacaaagcatggctggaaattattttttactacatcttcttctcactgcctttctgggacgagctgctaaagcacaggacgagacttcaactgacatggacatccaaacagccaatcataccgtagaccctttgatgatctctgtgacatcagatggacctccaactttgaccacacctggagaggtggaggaggacaccgtcccatccactggcacccgttgccgtggttactatgatgtcatgggccaatgggaccccccttttaactgtaatgctggtatcttcttgtactgttgcggcacctgtttctaccggttctgctgccagttccgtcaacagcgactggatcagacctcctgctccaactatgatactccaatttgggcaaatactggaaaacctgtggccaccaacactgaggtgcagccagaccacgagcgggatcgaactcatatgattgtatacattatctgtggtgtggtggccatcatggtcctggtgggcatcttcaccaaactgggtctggagaagagccgtggaggtcagaatgacctaagtaactccaggactctccaggagttaatgaagcagccaggtggagaggcgaatgctgtggatggacctctgagcaacagctcctctattggagcaaatggcatctctgccaggatgcttcgcagccgcagtgagcagtaccatctaaacaacgctggcttttcttttggtgcactggctggactctctcatcctcaaagcaacctcagcataccaggccttgcactcaacaaatacaactctctgaaagcagttgctgacactgcaaaccggagctactacaagagttatccactgatggacttctcccagcatcattcccctcctgtagctttccagccaatgccgatgcacccaaaagacaagtcctaccttcaccaggtcctcccttcccatgacattcactctcctctttccatctcgatcccaaccaaccatatggagaggacccgcatccctaaaaccatcacccaccctcaactgtccagctcggcctttaaagcttgggattctgggcgaagacacgtccaccggcagacctcacatccagggcacctgccgcgacgacaaacctacagcagcagaagacagtacagcatagaaacaataccagatttcctttcccagcctacaggctatgggggacaaccactgtatcagcaccatcccaaaattaaggcctaccagaccaacagcaaaacagaggtcacagtttgaggactcagataactgtatgcaccaacattaccatgtccagaaagtgtggttgttcttactgtcattgctaaaccacttttgtctaagtttcttgttttttttctgtgtcccacttttctgggttcatctaaggcctttgtgacgctgacaacaatgaggtgagctttcagaccggaacggaagaatggcacctgaggtcacattaaattaaataggacaacaccatcaacacatcagcctaaatctaattatcctggccatttttatgtaaacacaacctcaggatcaattatgtgaagtacgaagagacagaatgcaacacctagacatctagtcggtgaggcagtggcggggtaggtagtgctgtcgcctcacagcaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]