2024-11-01 08:08:54, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_021471760 11260 bp mRNA linear VRT 15-JUN-2017 DEFINITION PREDICTED: Danio rerio trinucleotide repeat containing 6C2 (tnrc6c2), transcript variant X2, mRNA. ACCESSION XM_021471760 VERSION XM_021471760.1 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_018394637.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..11260 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="6" /map="unlocalized" gene 1..11260 /gene="tnrc6c2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:100149391" /db_xref="ZFIN:ZDB-GENE-061207-48" CDS 733..5448 /gene="tnrc6c2" /codon_start=1 /product="trinucleotide repeat-containing gene 6C protein isoform X1" /protein_id="XP_021327435.1" /db_xref="GeneID:100149391" /db_xref="ZFIN:ZDB-GENE-061207-48" /translation="
MATGASPQGHYPISKASVNLSSSMVSNHGGPTRGWASEGKTDLSMGSRGQSSWGASNLNLNPSANPAAWPALGHEGPAVGSGPSSMVCSNPLSLSMCGQGGVAPPHGTNGNGNIGCVNENLVGDCAWGNPDIPEQHQSPTNVSFNMKPPILKTDGPNNTNPEPMSPVNSWRGNLSQSPTEPASKDGTAFWGSGNAKNGESKDSGWDSVGVSSWGQGGASRGSRGWGDWGKQPSTEGTEWDANEAPSQEHMSSWGPDTPASEGSRDSSEGHPRKRERSSSADLVPLLPKQDLDPRVLCNSGWGQTPVRQHTVWEMEASTDKKNDVGTEDWGSSSNTASTEPPPPPPGCANSNISPPPRMDTSKSEGHCRVMPNAGWGGSVPVSAQPNSGWGEPSANKKVSNGSGCNWGDPNPVAPNISGCNGQSWASEEKSPSWNDCTSQKTTQNWGDGPKSSSGWGSSGCANSGEWGESSEMKNSSGSSSWEPDSRKCKETQRGWTKASPAQSGCWGEAQHTNGSTQGWGGKLQESMCGNNGSGGIGSWGGPNSVKQSNSGWSSRCRQETGDESTGWEEPSPSSVRRKMDIDDGTSTWGDPSAYSKSVNMWDRNHSQNHPGTNNSGNGNNLSVPNSANHPQRQGPTQNHVSGSNNNASPSQGECPLNRISMVNPGWGEIPKVQPNTEPSSWGETASSSSSVDNGTSAWGQSSRGRGGWSEGSRDSSGSYGRGNAPAVSSPCQEGPKPMQDGWGSGGEEMGMNTSQWNADDGDMWNSPTSQDSTCNSWGHSRKGPQRVKVSNKQDDVWIMNRLIKQLTDMGFPKDPAEEALKSNNMNLDQAMSALLEKKNELDKRGMGTSDYSNGLNKPMVCRPTNLSKDSSLDHSPFLDKDGRLSDDSSSSPFMPSPGLKLPLASSSLPNHGLGGVSSGLSMQNLNNRQMHNGMFGTNGAAQTRVMQQQAPPPQPPVPPLSSTQPNLRAQVPQLLTPQVQAQLLQFAAKNIGLNPALLTSPINPQQMTLLYQLQQLQVAYQRLQIQQQMMQAQRNVSGPIKQQEQQVARTITNMQQQIQQHQRQLAQALLMKQQQPPPSSHTGLHQNLGKASQDSFTAGLNPNMNVNCMEVGSLSLKDPPQPQSRLSQWTHPNSIDSLTASTQHMEANLSKHGSISAAQSHVPAGKSSMEDSFSPYNMMSSSESPSNTLVSPESWTQGKSPNEKIASGSNISWPPEFCPGVPWKGLQNIDPENDPNMTPGSVPNGPTINTNIQDVNRYLLRDRTGASSPSQSGTLSSSNDWSDSAFNSLALFSQNERDAENPGKLLEMKSTWSPGPISHTQASLSQELWKVSPGTRNSSAPSRPPPGLTNTKPSSTWGGNSLGLSQGWNNSYSSEGGTWSSDSPNRGSSWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFASEEDVNRFFAQGQSLTPTTSWQASPAPGSSQPRLGNPTASHPTGLWSGGGGTKTVCSAGNSSSGNGGDMLWGGVPQYSSLWAPPNGDDARVIGSPIPINTLLPGDLLSGESM"
misc_feature 2791..3123 /gene="tnrc6c2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 3130..3243 /gene="tnrc6c2" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3424..4020 /gene="tnrc6c2" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4024..4890 /gene="tnrc6c2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 4879..5142 /gene="tnrc6c2" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6C protein (TNRC6C); Region: RRM_TNRC6C; cd12713" /db_xref="CDD:410112" ORIGIN
ttataaatcagggagctcctatgctacaattcacccgtgatttattccccacgccacctcccatccttgtctggatctaaggatacaccgttcctccttttactgcaggggattggggtcaaagcttggaggtgtgagatgccagtgttcagcttgtgtcaagaaggcaaaaaggacagacctttatggatgagccgtcttgctcaagcttgaggtgccagactctttaaaacctaatcccagtgtcccttcaggcccattctgaccctcaatctgcctgtaacctctgcagctactaccagcaatggcaagtgtagcccttgtattgccctacaacagcagttacctccattacagcagctcagtcctcgatatgtgccaagagaggttcctccacgcttccgacagcagaagcagaggcagctactgaacgagggtcgacctttacctagtggcgtgcataacacaaactctacttgccctcctctagagacagccaccagcaaacagctcacgggacttccacatcaaagtgacctgggagatcagcatgagaattgtgattggagcagcactgtcaccaaaggcagcagtgggaaccgggataaagtgattattaacaacaaagacatttggccttccattacatatagcaagagccggcaaacaccagaatgcatcttggacactaaacgcacaccagaggttgttagcaacagtagcaacactattatggctacaggagctagcccacagggtcattacccaataagcaaagctagcgttaatctctcttctagcatggtgtctaatcatggtggccctaccagggggtgggcctcagaaggaaagactgacttgtccatggggagtagagggcagtctagctggggtgcctcaaatctaaacctaaaccccagtgctaaccctgctgcttggccagctcttggacatgaagggcctgcagttgggtcaggacctagtagcatggtttgctcaaatcctctttcacttagtatgtgtggccaaggaggagtggcaccacctcatggcaccaatggaaatgggaacattggttgtgtcaatgaaaaccttgtaggggactgtgcatggggcaacccagatatcccagaacaacatcagtcacctacaaatgtatccttcaacatgaaacctcctatccttaaaactgatggaccaaataacactaatccagagccaatgagtccagtgaacagctggagaggaaacctcagccagtcacctactgagcctgccagcaaggatggaactgcgttctggggcagtggaaatgccaaaaatggagaatcaaaggactcagggtgggattctgtgggtgtctcttcctggggtcagggaggagctagcagaggcagtcgtggctggggtgactggggtaaacagccaagcactgaaggtacagaatgggatgctaatgaagctccttcccaggaacatatgagttcatggggtcctgatactccagcaagtgagggcagcagggatagcagtgagggccacccaaggaaaagagaaagatcctcaagtgctgatttggtccctttgcttccaaagcaagacttagatccacgtgttctttgcaactcaggctgggggcagactccagttcgtcaacacactgtttgggaaatggaagcaagtacagacaaaaaaaatgatgtagggactgaggactgggggtcttcctccaacacagcgtcaactgaacctccaccacctcctcctgggtgtgccaattctaacatcagtccacctcctagaatggatacaagcaagagtgagggacattgcagagtcatgccaaatgcaggctggggaggatcagtcccagtctctgctcagcctaacagtggatggggagagccttcagcaaataaaaaggtttccaatggatcaggatgtaactggggtgatcctaatcctgtggctcccaacattagtggctgtaatggccagtcttgggcttctgaagaaaaatctcctagctggaatgattgtacttctcagaagacaacacaaaattggggtgatggacccaaatcttcctcaggttggggaagtagtggttgtgcgaatagtggggagtggggtgaatcttcagaaatgaagaatagctctggaagttcatcttgggaacctgacagcagaaaatgtaaagaaactcagagaggctggactaaagcatcaccagcacagagtggttgttggggtgaagctcaacataccaatggttcaacacaaggatggggtggaaaacttcaggaatccatgtgtggcaacaatggatctggaggcataggatcatggggtggccctaattctgtcaaacagagtaactctggctggtcatcaagatgccgccaggaaacaggagatgagtccacaggctgggaagaaccctctccttcttctgttcgtcgcaaaatggatattgatgatgggacatccacttggggtgaccccagtgcttacagcaagagtgtgaatatgtgggacaggaatcactcccagaatcatccaggaacaaacaacagtggtaacggtaataacctgtctgtgccaaacagcgctaatcatccccaaaggcaaggacccacacagaaccatgtcagtggaagcaacaacaacgcctcacccagtcaaggtgaatgtcctctcaacaggatttccatggtgaacccaggctggggagagatccctaaagttcagccaaatacagagccctcttcatggggcgagacagccagttccagctcctctgtggacaatggtacttcagcttggggccaatcttctaggggccgtgggggatggagtgaaggtagccgtgactcaagtgggtcttatggcagaggaaatgcacctgctgtatcaagcccctgtcaggaaggtcccaaacctatgcaagatggctggggatctggcggggaagagatgggcatgaacaccagtcaatggaatgctgatgatggtgacatgtggaacagtcccacatcccaagactccacttgtaactcctggggtcattccagaaagggcccacaaagggtcaaggtctctaacaagcaggatgacgtttggatcatgaacaggcttattaagcaacttacagatatgggttttccgaaggatcctgcagaagaagccctgaagagtaacaacatgaatttggatcaggccatgagcgctttgttggagaaaaaaaatgaactggacaaacgggggatgggcacttcagactacagtaatggattaaataagcccatggtgtgccgacccacaaacctctctaaagactcctcactggatcactcccccttcctggacaaggatggcaggctgtcagacgattcttcatcctcaccgtttatgccttctcctggcctcaagctcccactggccagtagcagcctcccgaaccatgggttaggtggggtctcttctggtctgtccatgcaaaacttgaacaatagacagatgcataatggaatgtttggcactaacggagcagcacaaactcgggtcatgcagcagcaggccccgccccctcagccaccagtgccacctctgagctccacccagcctaacctgcgtgctcaagtgcctcagcttctcacccctcaggttcaagcacagctcttacagtttgcggcaaaaaacatcggtctgaatcctgcacttttaacctcaccaataaatcctcaacaaatgaccctgctgtaccaactacaacaactgcaagtggcgtatcagcgtttgcagattcagcagcaaatgatgcaggctcagcgtaatgtctctggtcccatcaagcaacaagagcagcaggttgcacgtacaatcacaaacatgcagcagcagatccagcagcatcagcgtcagctggcccaggccctgctcatgaaacagcagcagcctccaccatcctctcacacaggcctgcaccaaaaccttggcaaggcaagccaggacagcttcacagctggtttgaacccgaacatgaatgtaaactgtatggaggtgggaagtctctctctgaaagaccctcctcagcctcagtccagactctcacagtggactcacccaaactccatagattctctaacagcaagcactcagcacatggaggcaaacctcagtaaacacggttcaatatctgctgctcagtcccatgtgcctgctgggaagagctctatggaagattccttcagcccatacaatatgatgtcaagttctgaatcacccagcaacacattggtgtctccggagagctggacacagggcaaaagtcccaatgagaaaattgcaagtggctccaatattagctggcctccagagttctgccctggagtgccgtggaaaggtctgcagaacattgatcctgagaatgatcctaacatgaccccaggaagcgttccaaatggccccaccattaacactaacatacaggatgtgaatcgctacctgttacgtgacaggactggagcctcatccccatctcagagtgggactctgtcttcttcgaatgattggtcagacagtgcatttaactcactggctcttttctctcagaatgagagggatgctgagaatccaggtaaactcttggaaatgaagtctacctggtcccctggacccatctcccatacacaggcctctttatctcaagagttatggaaggtttccccagggactcgaaactccagtgctccttctcgccctcctccaggactgaccaacaccaagccctcctccacttggggaggaaattctcttggcctcagccaaggctggaacaactcttactcctcagaagggggaacttggagctctgacagtccaaacagaggaagcagctggttggtgctgagaaacctcactcctcagattgatggctccactctgcggactctgtgcatgcagcacggccctctcattaccttccatctgaacctgacacagggaaatgctgttgtacgttacagctccaaggaggaggctgccaaagcccagaaatccctgcacatgtgtgtgttgggtaacactactatcctggcagagtttgccagcgaggaggatgtgaaccgcttctttgcacagggccagtctcttacccccaccactagctggcaggccagcccagcaccaggctccagtcaaccccgactgggcaaccctactgctagccaccccacaggcctctggagcggaggaggaggcaccaagacagtctgcagtgctgggaacagcagcagcggaaatggaggcgacatgctctggggtggtgtgccacagtactccagtttatgggctcccccaaacggagacgatgccagggtaatcggcagccccatcccaataaatactctgctcccaggagacctgctgagtggagagagcatgtaggatgcatcagacatcataaaccaacaaagtcaaaagacccaacggatcaaatctcaagcaaatcaatgtggcgataatcactttttgtcgaactctaccagaggttgaaggggagacagctgcaaacctccaactgctgtttttttacgtcagactatttggtgtgttcgtggatcttcgtattcaaagacgttgacaaacataaatcaatagaagcagagctttttgatgctttttttgtttccaaagattgtttttgttcaaaactgttgttcaggagaagccaccaaagtggcagccatctgaaaacgacccaggcacagtgagacctcatgacacctttccctataatgacactcttctgatgattggaatgatccttgtactttttggtttgaaaatctgcatcactttttcacaactatttagccgtaagtgctctctctccatgacctcctaaagttttattttataagaacaacaacatcaaccaatttcctaagttgcacagttctgtttctgagccagcgaataggccagagctaatgagcagtggcctgtcagcatgactaatcaccaatgatacgtttcgtctttaattctgttcgtaattaaaagggagctgcactgctctgttgcgttttactcacactctttttttttttttttcgtttaatatgtgtatggttaaataagctgaatgttaagcttcgatttagatgaatgaatgtcattgtgtctgctggaacttgaccaagcatctgtgtgtgagtactttaccactgttaaaaacactcagtggatgctttttaatgatacctaaacgacttcagtgctgaatcaatcaaacgctattcagttactatgtggtcagccatttttaatgagatgcaacagagaattcattctgatgcattgtgcaatagaagccagagacgctttcttccgtccacactgaagcttactgaaactgttttttttcttgtttttgctgaagactatagcagaattgaatctttagactcatttttccgccttgccttgaactgtttgtctgcctttctggctgttcactagtatatttgtggaaaggaggaactgttaactgtgtttgtcatcactccatgcggtttaccacttggcatgtgtgggatgccacagtctcccagccacatctcttcaccaaacagaaatggaatccagagcgggagacacatggctcggaagtcaggcacaataccaaatacaatgcgtttctcttaatgcagtacagaataagagattcttgcgtttggtacaaacataaaagacatgtacattttataagtcacttcttaaaggggtattagcaaagcacttattacaagagcagtgctccttctgaaagccaataaatcagttgatggagcgtattgtttaaaaaaaatgaaaagaaacaaaaaaaaaatcttaaggcaacttttaactgttaccttttttatatatacaccttactggtattcaaacggctcatttgtttgtcgtccatctctgatcaataaacttttcagactattccgaattaagggacgaacaaaaactacaatcagttgaaacttgcaatgtatgttttttgtgtctgtatattttctcttctcactctacccaaagtgaatgtcgttgttgctttgatacagtcaaaagactttattctgtcctgaggaggcacttcagttggattggatttgaaaaagaggctgtcagtgcctcagtgtggaaactgatggaggatatttgattctcagtagcagattcctctgtggaatgaaggaaaggacattatgatgtgatgatgatatggacggacgatgatgtgatgtttgcagtagtaacttaggtacagatcttcaaatgtccctcgttccatctgggatgacggctctcatgcaacctaacccactccatccctcatgtggttttgctggaatttaagactgaatggaatcgccagtgttgtatattatgacttttttttttccacacattctgttggtcttcattcagcgttctttaactgcctgcagcgcatatggatacactttaaaagaggtgcctcggtatacttatcctgtgtcacggatgcaaatgaagatgctgtgatgtaggccatgtttcgtgtgaaaataactagtttttgttgttacagtgttagatcatttagaataggggctcttttattgatgtgtgtgtgtgagtgtgtgacctaaccctggacatcccacctctaactcagctgctaacatccactcttttgtgtggcctcactgaagccaaccctgttatctagaaaagctgcccatacttgaaaagccctgtccgagcagtatttctatggacagactctttctgccattggcgctttaactacagcacacggcatgctgtgactatgcaaagtgagaaaagatgggcttgtaatgtccgccctgtgccaatctgtggctttgaaaggaagtttaaaaattgtgcagtcctcctgtaatattatcttacatacacaagaccattgacgtccttgttgaacttagggtgtttcctgacacaaagcattttgttcaaattcttttcgggaggtctgcgcaccaattgtgctgaatctgatagatctcgttcactacaatctcagggcatgacaagatgaaccatttttgtttaatgaaagttgatcgtttcaaagatttatcaatttcaagcgggtctacgcattcagttatgtgtgtacaaatcttacaaagcgtacatgaaagaaacacgacagaatatttatcaatggggcaatacattttggagggtggctagttagggtgttttcaatcctgatgaacaggaattgttggcgagtcgtcagtaaatgggacctgcgtattgtacctctctgctgctgcttgtgatgaattcccctcatggtctcacgtgccaatgtatgcataaagatatataggtacactgtggcattgctgacttcacatcttaaattccaatgtgtggttttgttgtagagcacttctgtttgaaggcactttgatgattcttgtgtgtttgaggtgggattgggtttgaaaatgggttgaggatatgctgattatttgtgataatcttgttgctgtcattagaagaataactagctagaacttttaacagcattgggggttgtggtgtgctaatggcgtacagataatgagtaatccctggtacttttgttttgttttgttttttgaataccaaaaaatgaaatggcattttattatcttttatattaaacaaaaacaagtaaacactgaaggagaaaaaaaacatttcaaaatgcacatcttgcagatgatatctcctgtttgctgatcacatcctgaaggttgatggcaagctggagtgccttttaaaaaaagtttgtttgtaaaaagaactgtacaattgtcatctcagttcatttcactgttgcctgtgtatgtaactgccttgttccaaattcagtcacagctgactgacagtgaaccacaatgtgactgaaaacatcacaggacgtctctggtgacaccagcataggtagactatgactacagttaactttattctctgtattatcatgtttattttgtagaaaaaatgctatcagatctccaaatccttcacttttaaaactcctgggtaaaaaatgatttgaaaacgagcaatagggtgcgtcatcggtgggaatttgcctaaaaggagaaagtgatcagcgattgatcaaaaccaaacagtcttactgagggggttgtgtgtttgttatatggactaaagacatccatgcagtatttgtggataacttcaatcattatgttgaaccccatcattctgaacaatgtttctctttaggcaaagaatgaaaaatcataaacatatcaaaatctatatctccaccaatacttgaattaaagcacgccaattgtaaaatgtgaatttattttttcttgcattttgtttgggtctgacaccttttaatgtatttgtaacattttcacaaataacttctcaacaaagagaaatatttggaatgcgtgagtttgagtgctttagttcatttgctctctaatcgctgattgttgttgttgttgggtatctgccagcaattataatccattttgtttgttatactgctttgtgtgtgtgtgtgtgcgagaatgagtgtctttttcccttgcttgtactcaaaagataattgcaggggagatcatgacaatttgtgtgtcaatgtttactcaaggacttctttttatcctaatgtatgaaacctgtaaaattgtattctcatggtggtttttattgggaaaatacccacaaaggtgatcatttacatagtgttttcatttcagttacgttttcatttaaatttcagttacagtttgtttgttttttttttttgttttttttgctcaattaaaaaatctaaaaaaaataaataaaaaaagatcaaaactctttttttttttctctataagagcctattatttcaattctgaagagttttttctttttttttcaaatcttgaatcctatttttttttcttttcaaatgtctgaatttgctaaaagaagaaaacaacctacagacaatgacatcagtttaataacacgaaaatgaagtatgctattgctgaactctggggttgttttagtgtcactttgtattttttcctcatgaattctgttgtttatgttgtatgttgaactgatgctaatgtctttatgttttcttttcaaaaaaaggattctgtcttgcacactgacaaaagacttggattttttctcaggaagattaggggtccagagttccagttccactgttaagatgttgattatcatgagaatttaactaattgattaacaaatcagaaaaagattttaaaacaacaacaaaaaaagatcaactctaagcactgaaggttatggatttgaaaaaaaattatgttttgaattttaatctgtagcagacatttaccaaatattagatattaaagaacctatgcgttttatttcttaaagtagagtacttatgagatgtttttgtatcactttacatgcaaatagaattttgtttactggttaggttgtggaaggacctaccactgtttgatttttaccttacctgatgtttcccaacgaggtccagtgtcaaatgcttgatattccattctcttgtctttttatagtttggaaattcattagaggcctgtatgcaaaggcctgaaaattgtagatcaacacatagaacttgaacttctactagatttacgtactagtttttgagtgtgggttgaaaatactccatctaggtttagactaatgttaagatgttgtgaaaggattaagaatctatgcacatgtttgagaggactgtatgtccagacatgctattcttacaaggatatctgggaggggggagggggatcatgcacttgtttctttgtataacttttatttgaatcagcagattttagtgtcatcaccatgctctgcgtctcaagatgtgagcttcaacaaccaagcactgtgggtttattccaatctgtgacattcttgtgtttaaatggaatgatgggttggatggcatcttgtgaactgttgctctattgttcagatagaaaccacatgactgtactgagattcaacagcttttaaatgtttttcccttacccttgatagaatgtgattgttgaggacacagaaaagtctttccatgttgtatggagattatttcagcctatattaataaatagcattcttttctcttgaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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