2024-05-19 10:42:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_017358486 3160 bp mRNA linear VRT 15-JUN-2017 DEFINITION PREDICTED: Danio rerio mitogen-activated protein kinase 8b (mapk8b), transcript variant X2, mRNA. ACCESSION XM_017358486 VERSION XM_017358486.2 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007123.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_017358486.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3160 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="12" gene 1..3160 /gene="mapk8b" /gene_synonym="JNK; JNK1; jnk1a-1; mapk8; zgc:112379" /note="mitogen-activated protein kinase 8b; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 32 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns" /db_xref="GeneID:65236" /db_xref="ZFIN:ZDB-GENE-010202-1" CDS 224..1510 /gene="mapk8b" /gene_synonym="JNK; JNK1; jnk1a-1; mapk8; zgc:112379" /codon_start=1 /product="mitogen-activated protein kinase 8 isoform X2" /protein_id="XP_017213975.1" /db_xref="GeneID:65236" /db_xref="ZFIN:ZDB-GENE-010202-1" /translation="
MNRNKREKEYYSIDVGDSTFTVLKRYQNLRPIGSGAQGIVCSAYDHVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERLSYLLYQMLCGIKHLHAAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAATGLLMTPYVVTRYYRAPEVILGMGYQANVDIWAVGCIMAEMVRHKILFPGRDYIDQWNKVIEQLGTPSQEFMMKLNQSVRTYVENRPRYAGYSFEKLFPDVLFPADSDHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVWYDPSEVEAPPPAITDKQLDEREHSVEEWKELIYKEVLEWEERTKNGVIRGQPASLGAAVSSDSHEPSTSSSSINDVSSMSTEVTLTSDTDSSQETSNGALHCCR"
misc_feature 296..1303 /gene="mapk8b" /gene_synonym="JNK; JNK1; jnk1a-1; mapk8; zgc:112379" /note="Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase; Region: STKc_JNK; cd07850" /db_xref="CDD:270840" misc_feature order(317..337,341..343,380..382,386..388,437..439, 479..481,545..565,569..574,674..676,680..682,686..691, 695..697,725..730,737..739,770..772,776..787,791..793, 902..904) /gene="mapk8b" /gene_synonym="JNK; JNK1; jnk1a-1; mapk8; zgc:112379" /note="active site" /db_xref="CDD:270840" misc_feature order(317..337,341..343,380..382,386..388,479..481, 545..565,695..697,725..727) /gene="mapk8b" /gene_synonym="JNK; JNK1; jnk1a-1; mapk8; zgc:112379" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270840" misc_feature order(437..439,569..571,674..676,680..682,737..739, 770..772,776..787,791..793,902..904) /gene="mapk8b" /gene_synonym="JNK; JNK1; jnk1a-1; mapk8; zgc:112379" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270840" misc_feature order(557..559,575..577,602..604,611..613,698..712, 1190..1195,1199..1201,1208..1210) /gene="mapk8b" /gene_synonym="JNK; JNK1; jnk1a-1; mapk8; zgc:112379" /note="KIM docking site [polypeptide binding]; other site" /db_xref="CDD:270840" misc_feature order(725..757,767..793) /gene="mapk8b" /gene_synonym="JNK; JNK1; jnk1a-1; mapk8; zgc:112379" /note="activation loop (A-loop); other site" /db_xref="CDD:270840" ORIGIN
accgtgacgtagtacgcaagtgtccgcagctcaagtaaaggcctgccagtggacggaaacgcagtgcttgtgtcttgtgtggaaagacaaatacaacaacccgctgagaagaccccagtgtttttatgattctacacttgaattgtctgttcatcttttaggaggatttttgaaggtgaagctcttcttgaatgcccaggatacagtcagtacggttttcatcatgaacaggaataagcgcgagaaagaatattacagcatagatgtaggagattcaacgttcaccgttttgaagcgctatcagaatttaagaccaatcgggtccggagcacaaggcatcgtctgctcagcgtatgaccacgtcctcgatcgaaatgtggcaattaagaaactcagccgaccctttcaaaaccaaactcatgccaaacgggcctacagagaactggtcctgatgaaatgcgtcaaccacaaaaatataattggcttactaaacgtgttcacaccacagaagacacttgaagagttccaggatgtttatctggtgatggagctgatggatgcaaacctgtgtcaggtgattcagatggagctggaccacgagaggctgtcctacctgctctatcagatgctctgcggcattaaacacctgcacgctgctggcatcatacacagggatctgaaacccagtaatatagtagtgaaatcggactgcacgctgaagatcctggatttcggtctggcccgaacggctgcaaccggcctcctcatgactccttatgtcgtgacacgctattatcgggccccagaggtcatcctgggcatgggttatcaagctaacgtggatatttgggctgttggctgcattatggcagagatggtgcggcacaaaatcctttttccagggagggactatattgaccagtggaataaagtgatcgagcagctgggcacgccgtcacaggagttcatgatgaagctgaatcagtctgtgaggacgtatgtggagaaccggcctcggtatgcgggatacagctttgagaagctcttcccagacgtgctcttccccgcagactcggaccacaacaaactcaaggcgagtcaggcacgagacttgttatccaaaatgctggtaatagatgcatccaagcggatctctgtagacgaggcgcttcagcacccctacatcaacgtttggtacgacccatcagaagtggaggcgccgccaccagcgatcacggataaacagctcgatgagagagaacactcagtggaagagtggaaagagctcatatacaaggaagtgctggaatgggaggagcgaacaaaaaatggagtgatcagaggacagccggcctcgctaggtgcagcagtgagcagtgactcccatgagccctcgacgtcgtcctcctccataaacgatgtgtcgtccatgtccaccgaggtcacgctgacctcagacaccgacagcagtcaggagacgtccaacggagcgctgcactgctgcagatgaccatccttcttcaacctccgtcaccctctgaaatccttcatcaccttccattgtcttctgtcatgattcttcatcctccaaaatgcttcatcaccttccaaaatcatctattgttctctgtcatggttcttcatcctccaaaatcctcccattggccttttaaaatcctccatcctcccctgtcaccttccaaaatcctctagccccctcaaatatgctctgttaccctctaaaatcctccatccttctttgtttaccatccaaaatcctcaatcgccctccaaattcctccattctcctcagttaccttccaaaatcctccattgtcttcattcaccctccaaaatcctccactaccccgtaaatcctccattaccctccaaaatccctcattgtgtttgtcaggattcttcatcctctgtcgccctccaaaatccttcattttcctccaaaatcctctgtcaccggcaaaatcctcctacattatccttcaaaatccttaattgccctccattttcctccagagtcctctgtcacctccaaaatctcttcattcacccttcaaaatactcagttgccctctaaaatcctctattttcctctagaatcctctgtcacctcccaaatcctcctcaatcgccctccaaaatcctctatcaccctctaaaatcctccatcacccttcaaaattctccatcacgctccaaaatcctccatcaccctccaaaatcctccatcaccctccaaaatcctccataacccttcaaaatctcccattaccctccaaaatcctccatcaccctccaaaattctccatcatcctccaaaattctccatcatcctccaaaatcctccatcaccctccaaaatcctccatcaccctccaaaattctccatcatcctccaaaattctccatcaccctccaaaattctccatcaccctccaaaattctccatcatcctccaaaattctccatcatcctccaaaattctccatcatcctccaaaatcctccattaccctccaaaatcctccatcaccctccaaaatcatccatcaccctccaaaatcctccattaccttccaaaatcctccatcaccctccaaaatcctccatcaccctccaaaatcatccatcaccctccaaaatcctccataacccttcaaaatctcccatcaccctccaaaatcatatatcaccctccaaaatcctccattaccctccaaaattctccatcatcctccaaaattctccatcatcctccaacattctccattaccctccaaaattctccatcaccctccagaatcgtccatcaccctccaaaattctccatcaccctccagaattctccatcaccctccagaattctccatcaccctccagaattctccatcaccctccagaattctccatcaccctccagaatcctcaaactttcaagctcttgtcaattcaaaagtgtaagagtggcggggatagtttttttgagggcatctcaaaggcttttacaccaaaccagcattactttcactgctttcctgtttttattttgaactttgcatcaaattgaagctactgctacgtcgtcttgccattcggaagtggaatgattcaagtttatttgtaaagataaatggtgaatatat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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