LOCUS       XM_009297090            6872 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio FYVE and coiled-coil domain autophagy
            adaptor 1a (fyco1a), transcript variant X1, mRNA.
ACCESSION   XM_009297090
VERSION     XM_009297090.4
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007134.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 8, 2024 this sequence version replaced XM_009297090.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6872
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="23"
     gene            1..6872
                     /gene="fyco1a"
                     /note="FYVE and coiled-coil domain autophagy adaptor 1a;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 ESTs, 63 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 29 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:565649"
                     /db_xref="ZFIN:ZDB-GENE-110411-276"
     misc_feature    1
                     /gene="fyco1a"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             122..4615
                     /gene="fyco1a"
                     /codon_start=1
                     /product="FYVE and coiled-coil domain-containing protein
                     1"
                     /protein_id="XP_009295365.1"
                     /db_xref="GeneID:565649"
                     /db_xref="ZFIN:ZDB-GENE-110411-276"
                     /translation="

MATGAAVGDSQIQRIIRDLRDAVSELTKEYKESGEPITDDSSNLHKFSYKLEYLLQFDQKEKTTFLGSRKDYWDYFSDCLAKIKGANDGIRFVKSISELKTSLGKGRAFIRYSLVHQRLADTLQQCLMNSRVTSDWYNPRSPFLKPHLSVDIISYLYELNDVQFDVASRGHDLDAEWPTFARRTLGMTSSPSHLWKAPSRSSSINSLASTYSQQHHEFPGSPDFGPGLLSDMSMQNSSILNDTSMSAIDELRLELDQSELKQRELIDRIQQLGDEGSELRGVVVELQRQLDVSLAAQGNHQELQRNLEVLIESEHALSREVEVLRDRETRREVSHKDLQDMLAAAERKNEELMTRLDGVLDEKGQRAASDFNSAQKIHELLNELKEAEKKRMDALAEGEEKRRHAEHLAEEVKVKDEALKEAEVKMAAWMEKGEQLQTRAVEQRNFMEKLQGALAVREKETSNLQRQLRDLQNSLENMEKQANVEKKRMQDDKEELEMKMNGLEGLLQSLRTQLKVKESDLLSSTKRVHFLERESEKLRSENQKLEYELENSTKKEAKKIDEYKDSCAKLIEQNTKLLQTVNKNEESKKELLENKSSLESELAGLRASEKQLRAQIDDAKVTVDEREQRLREENRNLDESLQKANMQLEESESSIRQKEQENKDLMEVQVTLKSALAAMQKEIRDINNQIGELEKNLGVARCNEANLNAQLKDKATQLEDREKLCEELQGRVEELESRQRDLEVEKTKAERAFVKQTEMIQSLEAQRNLAEKTQLEKSTCQAKETKEMALKLTLLEDQLGLSAKEVSKLQEEVVNLRAKLHSAVEEKDKTQAKLEVTEASCAELRILTEHLKKQAEEQNRLHVSELLQSSEHVDKLTSQLNQETSAHEKTTAALASAKEDLVALKAQNERMVLENAETRESLHRVNTEMAELGMTICKLTAEREEARERWAAEAVRIQELQQHGVKETERLNASLVALHQENSSLQEELQQTDKLSETMLELKQLLDKTEGERDAAREEITAVKFQMSTESMSLKHQMKSLQEEIDGLKDQLDTERKKKSELEAKLSELEGANVEYSRLIEEKDSHITYCETLLRESESETQQLQERASRSKEALSDVEKEREELKQKLDQVLMETQNQHLRMSAELEDLGQTKVNLEERLIELIRDKDALWQKSDALEFEQKLRAEEQWWLVDKEATHCLGCQGQFTWWLRRHHCRLCGRIFCYYCSNNYVMTKNSKKERCCRECYTQHGAVVERFTKAELNSSSDNQPSNTAAQLPPPPYIPTPRVTVTDPGERADDGAFDIITDEEVNQIYDSDSRTTNGSHEEEGGQTGDNSVSSDVTSEEQEDMISVQDAEITLLKSGELSASVPLDIDEIPHFGDGSRELFVKSSCYSTIPITVGDRGPIISWVFSSEPKSISFTVVYRETLDTPVEQAKVLIPLTRCNSHKETIQGQLKVRNAGVYTLIFDNSFSRFLSKKVNYHLTIEKPVIYDGSDFP"

     misc_feature    149..619
                     /gene="fyco1a"
                     /note="RUN domain found in FYVE and coiled-coil
                     domain-containing protein 1 (FYCO1) and similar proteins;
                     Region: RUN_FYCO1; cd17698"
                     /db_xref="CDD:439060"
     misc_feature    <824..1774
                     /gene="fyco1a"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    1460..>3688
                     /gene="fyco1a"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    3692..3862
                     /gene="fyco1a"
                     /note="FYVE domain found in FYVE and coiled-coil
                     domain-containing protein 1 (FYCO1) and similar proteins;
                     Region: FYVE_FYCO1; cd15726"
                     /db_xref="CDD:277265"
     misc_feature    order(3692..3694,3701..3703,3755..3772,3776..3781,
                     3842..3850)
                     /gene="fyco1a"
                     /note="putative phosphatidylinositol 3-phosphate binding
                     site [chemical binding]; other site"
                     /db_xref="CDD:277265"
     misc_feature    <4415..4570
                     /gene="fyco1a"
                     /note="GPCR-chaperone; Region: GPCR_chapero_1; cl46312"
                     /db_xref="CDD:480652"
     polyA_site      6872
                     /gene="fyco1a"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

aatggcggagatgtctgtcaatcaaaaagtaggtcgtgccgtgatgtaaaggacaataacaacaaagcacaaaagtctaccgatgacctcttgacacctccagcaggaagctagtcagaccatggccactggtgctgcagtcggggacagtcagatccagaggattatcagagatctgcgcgatgctgtttccgaactgacaaaggagtataaagagagcggtgagcccattactgatgacagctccaatctgcacaagttctcctacaagctggagtatctgcttcagttcgaccaaaaggagaaaacaacatttctgggctccagaaaagactactgggattacttcagcgactgcctggccaaaatcaaaggagcaaatgatggaattcgcttcgttaaatcaatttcagagctgaagacgtctctgggcaagggcagagcatttatccgttactctctggtgcatcagcggctggcagacacactccagcagtgcctcatgaactccagagtcaccagtgactggtataatccgaggagtccgtttctcaaaccccatctcagcgtggacatcattagttatctctacgagctcaatgatgtccagtttgatgtggcatccagaggtcatgaccttgacgcagaatggcccacttttgccaggaggacattaggaatgactagctctcccagtcacttgtggaaagcaccgagtcgtagttccagcatcaacagtctggccagcacatactcacagcagcaccatgagttccctgggagtccagactttggacctgggcttttatcagatatgtctatgcaaaactccagcatactgaatgatacctcaatgagtgctatagacgaactccgtctggagcttgaccagtctgaattaaagcaaagagagcttattgaccggattcagcagttaggtgatgaggggagtgaactgcgtggagttgttgtggaactgcaaaggcagctagatgtttctttagcggcccaaggtaaccatcaggagctacaacgtaacctggaggtcttaattgagagcgaacatgcactctcccgtgaggtggaggtcttaagagatcgagaaaccaggagggaggtttcccataaagaccttcaggacatgctggcagcagcggagcgtaaaaacgaggagctgatgacaaggctagatggagtattggatgagaaaggtcaaagggcggccagtgatttcaactcagcccagaagattcacgagcttttgaatgaattaaaagaggctgagaagaagaggatggatgctctggctgaaggagaagagaagaggaggcatgctgaacatcttgccgaggaagtcaaagtgaaagatgaagctctcaaagaggctgaggtgaaaatggcagcttggatggagaagggtgaacaactgcaaaccagggcggtggagcagcgtaatttcatggagaaacttcaaggtgcacttgcagtaagagagaaagagaccagcaacctgcagaggcaactacgagatcttcagaactctctggagaacatggaaaagcaggccaatgtggagaagaagaggatgcaagatgataaagaagagcttgagatgaaaatgaatggtctagaggggctgttacaatcacttcggacacagttaaaggttaaagaatctgatcttctctccagtaccaagagagttcatttcctggagagggaatcagagaagcttaggagcgagaatcagaagttggagtatgagttggagaacagcaccaaaaaggaggccaagaagattgatgaatacaaggatagctgcgccaagcttattgagcaaaacactaagcttctgcagacggtgaataagaatgaagagagcaagaaagagttgcttgaaaacaaatcatccttggagagcgagttggcgggattgagggcctcagagaagcagttacgagctcaaatcgatgatgccaaagtgactgtggatgaacgagagcagcggctgagagaggagaacagaaatctggatgagagtctgcagaaggccaacatgcagctggaggaatccgagagctcaattcggcaaaaggagcaggagaacaaggacctcatggaggttcaggtcactcttaaatcagctctcgcagccatgcagaaagagatacgtgacataaacaaccagatcggtgaacttgagaagaatcttggagttgcgaggtgtaacgaagcaaatctgaacgcgcagcttaaagataaggccacccagctggaagatcgagagaagctctgtgaggagctccagggaagagtggaagaactggaaagtcggcagagggatttggaagtggagaagacaaaagcagaaagagcctttgttaaacaaacagagatgattcagagtcttgaagcacagagaaacctggcagagaagacacaacttgaaaaaagcacatgtcaagctaaagaaactaaagagatggccttaaaattgactcttctagaagatcaactgggattgagtgcgaaggaagtttctaagctacaagaggaagtggttaatctcagggctaaacttcacagtgctgtggaggagaaggacaagacgcaagcaaagcttgaggtcaccgaagcttcctgtgctgaactgcggatcttgactgagcacttgaagaagcaggccgaggagcagaatcggctgcatgtgagcgagctgctgcagtctagtgaacatgttgataaattaacttcgcagctgaaccaggagacctcagcgcatgagaaaaccactgcagcacttgcttccgctaaagaggatctagtggctctcaaggcccagaatgagcggatggtcctggagaatgcggaaaccagagagagtctccaccgggtcaacactgaaatggcagagttgggaatgactatttgcaagctcaccgccgagcgggaagaggcccgggaacgttgggccgctgaagctgtacgcatccaagaacttcagcagcacggagtgaaggagacagagcgactcaatgccagcttggtggctctgcatcaagaaaactccagtctgcaggaagagctccagcaaacagacaaactgtcagaaaccatgctggagctaaagcagctgctggacaaaactgagggcgaacgggacgctgcacgggaagagatcaccgctgtgaaattccagatgagcacagagagcatgtctctcaagcaccaaatgaagagtcttcaagaagagattgacggtttgaaagatcagctagacacagagaggaagaagaaatcagagctggaggccaaattatccgaactagagggagcgaatgtggaatactctcgtctgattgaggagaaggactcgcacattacttactgtgagactttgctgcgtgagagcgagtctgagacacagcaactgcaggaaagagcatcaagatccaaagaggctcttagtgatgtagagaaggagagggaagaattgaagcagaaattggatcaagtgttgatggagactcagaaccagcatctccgcatgtctgctgaactggaggacctgggacaaactaaagtcaacctggaggaacggctcattgaacttattagagataaggacgctctgtggcagaagtctgatgctctagagttcgagcagaagctaagagcagaggagcagtggtggctggtggataaagaggccacacactgtctgggctgccagggtcagttcacatggtggctgcggaggcatcactgcaggttgtgtggccgtatcttctgctactattgcagcaacaattacgtgatgaccaaaaactcaaagaaggagcgctgctgtcgagagtgttacacacaacacggcgctgtggtggagagattcaccaaagctgaactcaacagctcatcagacaaccagccatcaaacactgccgctcagctgccaccgcctccatatatacccacaccaagagttacagttacagatcctggtgagagggctgatgatggagcgtttgacattattacagacgaggaagtgaaccagatctatgacagcgactcgcgcaccaccaatggatcacatgaggaggaaggaggacaaaccggagataatagcgtatcaagtgacgtgacgtctgaagaacaggaagacatgatttcagtacaggatgcagaaatcaccctcctcaagtcaggagagctcagtgcctctgtgcctctggatatagatgagattcctcatttcggcgatggctcccgtgagctgtttgtcaagtccagttgttacagcaccattcccatcacagtgggcgaccgcggacccatcatcagctgggttttctcctccgagccaaagagcatctccttcactgtggtgtacagagagacacttgacacacctgtcgagcaggccaaggttctgattcccctcacgcgctgtaactcacacaaagagaccatacagggacaactcaaagtgcgcaacgctggagtctacacactcatcttcgataactcattctccagatttctctccaagaaggtcaactaccacctgaccattgagaagcccgtcatctacgatggaagtgacttcccttaatagcagtgttgtggtttgtagtgtctacagtttgtgtaaaactgactgttaagtattgactttatcattttaattcagacctgttcctgtgtaccaagggcttcggttttacacatttattttatattttaatgttttaccactgatagaatagctgtaatctgttgtgactggtgttatgaacgggtttctacagttgcatgaaagcagaatatttgctttttttgttgtgtgttttaatattattagtgtggttttagccgttttaaatgattacagacactacagatgaattcagatatacagggcaggtgaagctcatgtgggtaaatatccaaccacaatgacacaatcacaaattacctttaaaaactgacaatttcaacatttgttttcatttatagctgcatatgactttgacaagactttgcagatattttacactacattttcactacagttgttcaccataagctacatgagttcacctagtaaacgaaaatgtttaatattttgtcattttaaggtatttttatagtattttgaaaataggctgacaatgtcacactgtatggtacaaaaacatacagcagctgcttttaaaaacactatctagtacttttatttactcaaatctggccattcagataatatttcatgacacaatctgttagttttacttcaattgtgtattttccattgaggtaattaacccaaatgtcactggaaagacagcagttgatctatataactgctaactattcttgtgtcagtcgtgttattaatatatatgcacaatgtatgcaatgtacatgcaaatgaggcactttttcctcgtctacgccatgcaaaaacttttgcagtacattgactaaaacggcacatgttttgtactcatgtagcacttgcatagaggatatttttgtacgccgttcagttttgatctgataaaattggtttagagatcatattcgtaatattttcggacatttgattttaataataatatataatatattctgttgaatgtgcattattggatttgcatcatgataggtcaacattagtaatataaacaccatttatagttagggttcatacattttcggacatcaacacagttctaacatttttggctctatacaccaacacaatggatttgaaatgatcaagatgtgttttaactgcagacggtcagctttaaattgaaggtatttacatcaaaatcaggtgaacgctgtaggaattacaacagtttgcatatgtttgccacccacttgttaagggtccaacagttggcttctaagctgttccatggcctggtgtgtgttattcaagcctgatctcacgaaaaagcttaagtattttacattttttcagtttagtggctaatttgttgaagttcagtcgtacgaaattgtacgattttaaaaagaaggcgtggcacctgaccccacccctaaaaccaatcgtcattgggggataaacaactgtatcgtacaaattcatacgaattagccattaaatcaaaaagtaatgaattgccgtgagattgtgttggttattgcctcattatcccaatcacaatgagcagataaaagatttagagttcatttctagtgtgttatttgcatttggaatctgttactgtcaactctcaagatgagattcaaagagctgtcactatcagtcgagcatgtcatcgttaggctgaaaaaacaaaacaaacccatcagagagatagcaaaaacatcaggagtggccaaaacaactgttttggaacttcttaagaagaaagaacgcaccactgagctcaacaacactaaaagactcagaagaccacaggaatattggatttacgtccaaatcaggtgaacgctgtaggaattacaacagtttgcatatgtgctcccacttgttaagggtccaaaagtaattggacagaataataatcataaatcaaactttcaatttttaatacttggttgcaaatcctttgcagcctaaagtctggaacgcatagacatcaccagacactgggtttcattcctggtggtgctctgccaggcctctacagctcttcagttcctgcttgttcttgggggattttaccttcacttttgttttcagcaagtgaaatgtaagctcagttagattcaggtcaggtgattgacttggccattgcacaacattctacttctttcctttcaaaaactttggttgcttttgcaggatgctttggctcattgtccatctg

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