2024-05-10 09:24:51, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_005165464 5872 bp mRNA linear VRT 15-JUN-2017 DEFINITION PREDICTED: Danio rerio si:dkey-46g23.1 (si:dkey-46g23.1), transcript variant X1, mRNA. ACCESSION XM_005165464 VERSION XM_005165464.4 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007114.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005165464.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5872 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="3" gene 1..5872 /gene="si:dkey-46g23.1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns" /db_xref="GeneID:793145" /db_xref="ZFIN:ZDB-GENE-070705-475" CDS 99..4517 /gene="si:dkey-46g23.1" /codon_start=1 /product="trinucleotide repeat-containing gene 6B protein-like isoform X1" /protein_id="XP_005165521.1" /db_xref="GeneID:793145" /db_xref="ZFIN:ZDB-GENE-070705-475" /translation="
MEDSQCKTGDSGHQEGAEDSTRESASPCPVFGGWSEAPEGGKDANWSAVADGQPPSTVPPRYMPREVPPRFRNQQEPKVLLKRGQPPLSCMLLGGASGGDASPRLPLQEHSDASDSTVDSVSLHSSSDASATPTYANYTWGRGSGGQASSQGMDKDSSDVEKWPRPEDSWNSDQTLHSARLGMDESADLQMDSSSKLSEHAEDSASSQSENKESIKGVIQNFSSKVSPLSGDQEDTQGLNPNYTPVGDLSTNTASEESSPTPLSPAHPLYQTLLKREEPVTGDWAKPGPNGGAASSMDLWGTIENPAVKSNGGSSGDGTSQGVWDGDAVGSYKQAATGQTSDFAVGKSKEDMSEEVSAESLHKSPVFGNNVASGDDNQKVADACDGSKGKSASSEDAQNLVQSPSKCHPEEALQSMINHTNLDPKVLCNTGWGKTQIKQNVAWDFEADVGNVGWDAEVNTERSKEGWQEAGDLSNSKMQKQEVGHMGRAQGWTERGEMSIGTGHKAGGWGEDQEGASRREGTGWSQGGGKEWTPVPEAGGWKEEKGTNQNEGLWGSPEDSGPRSGGWDCKTHQGWGEKLLPSQIPNKQAALKTQNQQPQQQSQTQQQMPGYPKVVQDRGRTGENDEQSKGSGWSCGPIPQIASAGEPSGWDEPSPQSISRKMDIDDGTSAWGDPSRYSSKNVNLWDKNSSQPQQQSSGRPAGTPSKNSGPAIWTRSSGPSDSSMESGPAPWVKPFDGSSGWGESSEPGKGGWGNSHSHPNKTGSKSMQEGWGDEGSNSSRHSSWEEEDGGVWGGRGSQSNMSSSYSSGGWGQSQGSRRLSSKSPLKGNSGDSWVSPVSRQFSNMGVTDDDSSMGHDNRHDRRGMSDGEMRRGGRTGGAFRSQTAKETGCGESGPYLDKVGGHGMFGGGIPPMRGMHQAGVHPLNPSPGIRAQVPHQFLPPQVPGPMLKPMAPPSGGMFPPQLSPQHIAMLGGINPHMQQFQLACQLLLQQQQQQQQQFLNQRKFSPPLRQQHDPQQLARIMAILQQQQQQQGVVGPKLSPSPLGAHIPKHPDTHLHHLGLNTHKPPEAAVHAAIGVSELHNKAPAAYTGAVKLPDGSSFSQYDVLGSGWHRSAAGKVDAPPANPSWPPEFQPGVPWKGLPSHESDPDPYMTPAGMLGSSLLSDTEHHLLQDNTGSNSVNTCMPSPGAWPYSASDPPLTAHGTAKYTELKSSWPPEPIGHSKSWRTNRNASQMPRPPPGLSSQKQPWVEEGPRMARAWGGGASGTDTPFKSEWSDGGASAGKSWLLLRNLTPQIDGSTLRTICLQHGPLLTFHLGLTQGSALIRYCSPHEAAKAQSALHMCVLGNTTILAEFMSEEDVIRYFTHSQAAGVAGSPEVSPGSDSREGERAPGVPDGDAPVGWQGLDGAPGSTVEVPGLAILSQWSNNAGEGAGKGVWGGVAPGYHGSSLWGAPQLEDGTAGLLPGNLLGGGTDSL"
misc_feature 2190..>2477 /gene="si:dkey-46g23.1" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature <3381..3932 /gene="si:dkey-46g23.1" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 3942..4187 /gene="si:dkey-46g23.1" /note="RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169" /db_xref="CDD:450164" ORIGIN
gtgagagggacgagacacgagagggacccggatgttgatcagcgcgtcgttagtgcgcagctgcaggccggactgactgaggaagggagcagcagttcatggaagacagtcaatgtaagacaggagacagcggtcatcaggagggcgctgaagacagcacaagagaatcagcctccccctgtcctgttttcgggggttggtcggaggcccctgagggagggaaggatgccaattggagcgctgtggccgacggacagcccccctccacggtgccgccgcgatacatgccccgtgaggtgccgccgcgcttccgcaaccagcaggaacccaaagtgctactgaaaaggggccagccgccactgtcctgcatgctgctgggaggcgcaagtggaggggacgcctcgccccgacttcccctgcaggagcactctgacgcctcagattctacggtagattcagtttctctgcactcatcatctgacgcctccgccactcccacttatgcaaattacacatgggggcggggctcaggaggtcaagcctcgtctcagggaatggacaaggacagttctgatgtagagaaatggccaagaccagaagactcatggaatagtgaccagaccctacattctgccaggttggggatggatgagtccgctgacctgcaaatggacagttcttctaaactctctgaacatgccgaagacagtgcatcttcacagtctgagaataaagaaagcattaaaggagtgattcagaactttagctccaaggtctctccgctttctggagatcaggaggacactcaaggtctaaacccaaattatacccctgttggagatctctcaaccaacactgcctctgaggagtcttctcccacacccttgagtccagcccatccactctaccagacactcctcaaaagagaagagcctgttacaggagattgggcaaagcctggaccaaatggtggtgcagcttccagcatggatttgtggggtaccatagagaatcctgctgtgaagagcaatggtggaagtagtggagatggcacctctcagggagtgtgggatggagatgcggtaggttcatacaaacaggcagctacaggacagacctcagactttgcagttggtaaatcaaaagaggatatgagcgaggaggtaagcgcagaaagtttacacaaatctccagtgtttggaaacaatgtggcttcaggagacgacaatcagaaagtagctgatgcttgcgatgggtccaagggtaaatcggctagcagtgaggatgctcaaaatctggtccaaagcccctccaaatgtcacccagaagaagccttacagagcatgatcaatcacactaacctggatcccaaagtgctgtgcaacaccggatggggcaagactcagatcaagcagaacgttgcgtgggattttgaggcagatgtgggcaatgttggctgggatgcggaggtgaacaccgaacgcagtaaggaaggctggcaggaagcgggtgatctttccaactctaaaatgcagaagcaggaggttgggcacatgggtagggctcaagggtggaccgagcgtggagaaatgagcatcgggactggtcacaaagcgggtggctggggggaagaccaagaaggtgcatctaggagggaaggaacaggttggagccaaggtggcggaaaagagtggaccccagtgcctgaagctggaggctggaaggaagagaaaggcacgaatcagaatgaaggattgtggggcagccctgaagattcgggaccgcggagtggtggctgggattgtaaaacccaccagggatggggcgagaaacttcttccatcacagataccaaacaaacaagcagcacttaaaacccaaaatcaacaaccgcagcagcaatcgcaaacccagcagcagatgccgggatatccaaaagtcgtacaggaccgtggtcgtacaggagagaacgatgagcagagtaaaggctcggggtggagctgtgggcccatccctcagattgcttcagctggtgagccgagcgggtgggatgagccctcgcctcagtccatcagtcggaagatggacattgacgacggcacctctgcatggggggatccgtcacgatacagcagcaagaacgtcaatctgtgggataagaacagctcgcagccccaacagcagtcctctggaagaccggctggaactccatctaaaaactctggtcctgcaatatggacacgcagcagtggcccctccgactcgtccatggaaagcggtcctgctccctgggttaaaccattcgatgggtcatctggctggggggaatccagtgaacctgggaaaggcggatggggaaactcgcattcccatcctaataagactggttctaagtctatgcaagagggctggggtgacgaaggctcgaattcctcccgacactccagctgggaggaggaggatggaggagtctggggcggtcgggggtcccagagcaacatgtccagctcatacagctccggcggctggggccaaagccaggggtccaggaggctcagctctaagagccctcttaaaggtaacagtggagactcgtgggtttctcctgtatctcggcagttctcaaacatgggcgttacggatgacgactccagcatgggtcacgataatagacatgacaggagaggcatgagtgatggagagatgcggagaggaggcaggactggaggagctttccgctcgcagactgccaaagagacgggctgtggagagagtggaccctacctggacaaggttggaggtcatggtatgtttggcggtgggattcctccaatgagggggatgcatcaggccggtgtgcacccattaaacccctcccctggcatacgagcacaagtgcctcatcagttcctgcctcctcaggttccagggccgatgctgaagccaatggcgccccctagcggaggcatgtttcctcctcagctgtcccctcagcacatcgccatgctcggcggcattaatccacacatgcagcagttccagctggcctgtcagctcctcctgcaacaacaacaacaacagcagcagcagtttctgaatcagaggaagttttctcctcctctaagacaacagcacgacccgcagcagttggcgcggatcatggcgatcctccagcagcagcagcagcagcagggtgttgtgggacccaagctctctccgtctcctttgggtgcacacatccccaaacaccccgacacacacctgcatcacctgggcctgaacacacacaaaccccccgaagcagcagtgcacgcagccatcggagtatcagaactacacaacaaagcccctgctgcgtacactggagcagttaagctgcccgatggctcctcgttctctcagtatgatgtgttgggcagcggttggcaccgcagtgcagcagggaaggtggacgcgcctcctgcaaaccccagctggcctccagagtttcagccgggcgtcccgtggaaaggcctcccgagccatgaatctgaccctgacccctacatgacccctgcgggaatgctgggatcctccctgctcagcgacactgaacatcacctgctgcaggacaacacggggtcaaactctgtgaacacctgtatgccttcacctggtgcctggccgtacagtgcctcagatccccccctcactgcacacggcacagctaaatacacggagctgaagtccagttggccgccggagcccattggacacagcaaatcatggcggaccaatcgcaacgcttctcagatgccccgcccccctccgggcctgagctctcagaagcagccgtgggtggaggaggggcctcgcatggccagggcatggggaggcggagccagcggcacggacacgccctttaaatcagagtggagtgatggaggagcgtcagccgggaaatcatggctgctgctcagaaacctcacaccacagatcgacggctcgaccctgaggacgatctgtcttcagcatggccctctgttgacctttcacctcggcctgacccagggcagcgctctgattcgctactgcagcccgcatgaggccgcaaaagcccagagcgccctgcacatgtgcgttctgggaaacaccaccatcctggccgagttcatgagcgaggaggacgtcatccgctacttcacacattcccaggccgcaggggtggcggggtcaccggaggtttcccccggatccgactccagagagggcgagcgggcgccaggcgtaccagatggagacgcgcctgtgggatggcaagggctggatggagcgcccggatcaacagtggaagtgccaggactcgccatcctcagccaatggagcaacaacgccggcgagggggcggggaaaggagtctgggggggcgtggctcccggataccacggcagcagtctatggggtgcccctcagttagaggatggcacggctggcttgttgccgggcaacctgctcgggggcgggacagacagtttgtgattggcagctgtcaatcatggagtgagtggtacgcagattttcaagtgtgtcaaagcggtgtcagactgcaaaaataatgatctttcccaacatctggaagcccaatgtgaacacgagagacggccagcctaggaaacatttcagtttcagatagaagctctgcaaaaatgattaagcctttaggagttctgccttgtgactttatttattaagacttgtctaacccacagtactgtggagtattagtgtagactcactgttttatttacatttcattttaactatacacacacacacacacacacacacacacacacacacacacacacacacacacgtgcacagactttaactaacattgtgttttgttttgaattgtcctggaaataatgtcacaaggcagaagacgtgtgtataaatgacatatctctatgtaaatctagacttcttaataaggtgtatgtagttctgagtgacagttaccaaaaacaagcacgcgtggcttctgtgtgtgtcctcattatttttgcagttgcttctgttgacacactgcagctttaagacactcacattcagagagctacatttccacacaaacactggacgtttcgacaggcttttatatccagtcagatattaaacacacacacacacacacacacagatgcagtgtgagcgccgcaggcattcgcttacagacattctgatcattgccagagttaagctatcatgtatttgaatgcagggactgttcctaaaggccttctttcactctcacacacacacacacacacacacacacactctcgcactgctcaacttgaacaactgatgtaaagctgatgttaggctggcacatgcagacactgtttgatgcttcgactgatttaattcaagtgcaagagcatctgaaacctgtagatgagggaggatctcttaaaaacacacacagggcacgcgtttcactcctgaatcactaatctgcactaccaaagcagttttaggactaattttaatattgttttaatgataactcgcacgtgaaatgtgattcttaaagggacagttcacccaaaaataaaatgtgatcagtatttacatgcacacaaactgattatacaggcaagccggaaattattcatacttctggctaatcctgactactttaatccaactagtaagtgtttttatggcttgtaaatgacaccggtttatcctaaaagataataaggtgatgtacaagaggcttcattgtgaaaacatatatatatttctcagcttttgtttacatttgaatcaaaactttaagtcagaatttgccttggcgtataaataatctcaggtttgactgtata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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