2024-05-10 10:50:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_005158472 5528 bp mRNA linear VRT 15-JUN-2017 DEFINITION PREDICTED: Danio rerio argonaute RISC catalytic component 1 (ago1), transcript variant X1, mRNA. ACCESSION XM_005158472 VERSION XM_005158472.4 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007127.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005158472.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5528 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="16" gene 1..5528 /gene="ago1" /gene_synonym="si:ch211-119n15.3" /note="argonaute RISC catalytic component 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns" /db_xref="GeneID:570775" /db_xref="ZFIN:ZDB-GENE-110606-3" CDS 397..3012 /gene="ago1" /gene_synonym="si:ch211-119n15.3" /codon_start=1 /product="protein argonaute-1 isoform X1" /protein_id="XP_005158529.2" /db_xref="GeneID:570775" /db_xref="ZFIN:ZDB-GENE-110606-3" /translation="
MEAGPSGAVPVGPYPPPLQQVFQAPRRPGMGTVGKPIKLLANYFEVEIPKMDVFHYEVDIKPDKCPRRVNREVVEYMVQHFKPQLFGDRKPVYDGKKNIYTVLALPIGSEKVDFEVTIPGEGKDRIFKVSIRWLAKVSWRLLQETLVSGRLQVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKTLTDSQRVRFTKEIKGILQKHSPGVSFVGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNANFNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKSERIGKSGNIPAGTTVDTSITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHVSGQSNGRDPQALAKAVQIHHDSLRTMYFA"
misc_feature 397..3006 /gene="ago1" /gene_synonym="si:ch211-119n15.3" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1606..2883 /gene="ago1" /gene_synonym="si:ch211-119n15.3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2017..2019,2029..2031,2065..2076,2083..2085, 2107..2109,2116..2118,2128..2130,2140..2142) /gene="ago1" /gene_synonym="si:ch211-119n15.3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2221..2223,2227..2229,2437..2439,2851..2853) /gene="ago1" /gene_synonym="si:ch211-119n15.3" /note="active site" /db_xref="CDD:240015" ORIGIN
atctcagcagtgggaggagaagaagaagacgaagacgaagaagaaacgggcgctcgctcggtctgagggggggtgacggacgggtcgagcgttttgttccgctggtgaatcctgcttgaacggaaagcaggagacacaacaacccgacacacagaagccagaccagccactgacgaaagtgcacggaggagcgggtctatataaataggaactacggagcttttgtttctctctcaactcctgcgggtttgggggctccagcggcggcggcggagaagatcccgctcgcctagggaaggaggctggaagtcggggacgcttccagcctgcagggccaggcgccgtggcgattgagtatctggactttggtgaacccttaggggctcagtggatgggatggaggcgggaccatctggcgctgtgcccgtcgggccgtaccctccgcccctgcagcaggtgtttcaggcgccccgcaggcccggcatgggcaccgtcggcaaacccatcaaactgctggcgaactacttcgaggtggagatccccaaaatggacgtgtttcactatgaggtggacatcaagcctgataagtgccctcgacgggtcaacagggaggttgttgaatatatggtccagcatttcaagccgcagctcttcggtgaccgaaagccagtgtatgatgggaagaagaatatctacactgttttagcgttacctataggcagtgaaaaggttgattttgaggtgaccattcctggcgaggggaaggatcgaatctttaaggtgtcgatccgctggttggcgaaggtgtcctggaggctcctgcaggagacgctggtcagtgggcgactgcaggtcccgctggagtccgttcaggctctcgacgtggccatgagacacttggcctccatgaggtacactccagtgggccgctccttcttctcgcctcctgaaggttactaccatcctctaggtggcggcagagaggtgtggttcggcttccatcagtccgttcgacccgccatgtggaagatgatgctcaacattgatgtatctgcaacagccttttataaagctcagcctgtcattgagttcatgtgtgaagtcctggacatccgtaacattgatgagcagcccaagacactaactgactcgcagagggtccggttcaccaaggagatcaaaggaattctgcagaagcacagcccaggcgtatcttttgtcggcctgaaggtggaggttacgcactgtggtcaaatgaaaaggaagtaccgggtctgtaacgtcacacggcgtcctgctagtcaccaaacgtttcctctacagctggagagcggacagacggtagaatgcacagtagctcaatatttcaagcagaagtacaacctgcagctcaagtaccctcacctgccctgtctacaggtgggacaggagcagaaacacacatacctgcctctggaggtttgcaatattgtagcagggcagcggtgcatcaagaaactgacagataatcagacgtccaccatgatcaaagccacggcgcgctccgcaccagaccgacaggaggagatcagcagactgatgaagaacgctaactttaatctggatccttacattcaagagtttgggattaaggtgaaggacgacatgacggaggtgaccggcagagtccttccagccccaatcctgcagtatggcggtcggaatcgtgccatcgcgactccaaaccagggtgtgtgggacatgaggggaaaacagttctataatggcatcgagatcaaggtttgggccattgcttgcttcgctccgcagaaacagtgtcgggaagaggtgctcaagaacttcaccgaccagctgcgcaagatctcaaaggatgctgggatgccgattcagggtcagccgtgtttctgtaagtacgctcagggggccgacagcgtggagcccatgttcagacacctgaagaacacttactctggactgcagctcatcattgtcatcctgcctgggaaaacccccgtctacgcggaagtgaagcgtgttggagacactcttctaggaatggccactcagtgtgtgcaggtgaagaacgtggtaaaaacctccccgcagacgctctccaacctctgcctcaaaatcaacgtcaaactcggcggcatcaacaacatcctcgtgccgcatcaacggtcagcagtgtttcagcagcccgtgatcttcctcggggcagatgttacacacccgccggctggtgatgggaagaagccatctattactgctgttgttggcagtatggacgctcatcccagcagatactgcgctacagttcgagtccagcggcccagacaggagattattgaagatctgtcctacatggtgagagaattactgatccagttctacaagtccacccgcttcaagcccacgagaatcatcttctacagggacggcgtaccagaaggacagctgccacaaatcctgcactatgagctgttggccatcagagatgcctgcattaagctggagaaagactatcagcccggcatcacttacatagtcgtgcagaaacgccaccatacacgactcttctgcgccgataaatctgaacgaatcggcaagagcgggaacataccagcgggaactacggtcgacaccagcatcacacatccattcgagtttgacttctacctgtgcagtcatgcaggcattcagggcaccagccgaccctcacactactacgtcctgtgggacgacaatcgctttacggctgacgagctgcagattctcacctaccagctgtgccacacgtatgtgcgctgcacccgctccgtctccatccccgcgccagcatactacgccagactcgtggctttccgggcccgataccatctggtggacaaagaacatgacagcggggagggaagtcacgtctccgggcagagcaatggtcgagatcctcaagcgttggccaaagcggtgcagattcaccacgactccctgaggaccatgtattttgcctgaataacaaaaagcgcacgtctccggacacctcgagccagaacccctgggtgctaaaccagtccaatgaagcccacacaactgaacactttcttgagtctggcagaactatgctctttcggtttttatttaattgtgtattattgtatactaccttcgcactcccacatgtacgtatgtatgcaatacggagggaaggaacgcaggccaacctgtcgtttttgtatgccaccacaaagctgcctctgaagcgtccgttcgtctagccgtccgggtgccgccgtccagtggagcaatcctcgtttcttccatttggcattatttttattgttattgtgaaattcttttacatttgtattattattttttgtaagaaagagagagagagacatggtacattagcacttagttttagttgaaatggcagcgtttgcttgtcgtctgtgaagcagaacgcgatcaaaactgtagcagtgatgcaggattttcctccagcggttgtgtttagttagttaaagcgtggcctaattagtgtaacgatagatggaccactgagttgcaggatgcactcctgcatcagcataacaccgaaaccagcattatgcaccagccaaaatgtgacgccaaccgctctcatctggaagacgtgggtttttctgcacttgattcctctgcgctcttttagtagaggaggatattgttcactcctgatgcacgcaaatcttcctgagcctaaaagaacacaacttttttggaactaggctcattttacatccctccaagtgttaaacggctgagtttacccatttttaaatccctttagctgattcacttttagcttagcttagcataaatcattgagtcggattagaccattagcatcacagtcaaaattggccaaatagtttggataattgctttatttaaagctctgcgagtgttaaactggtgagttttacaattattaatctctttagcttattcacttttcgcttagcttagcatagatcattaaattggaatagaccattagcatctcactcaaaaatggccaaatagtttggatatttgctttgtttaaagctctccaagtgttaaaaggatgagttttatcatttttgaatctctagctaattcactttgagcttagcttagcatagatcattgaatcggattagaccattagcatctcactcaaaaatggccaaaaagtttggataattgctttatttaaagctctccaagtgttacactgcgagtttcaccattttcgaatccttttatctgattcactttagcttagcttagcatagatcattgtattgaattagaccgttagcatctcagtcaaaaatggccaaatagtttggataattgttttattttaagctctcagagtgttaaacgggtgagttttactattattaatctctttagcttattcacgttcagcttagcttagcatagatcattgaatcggattagaccattagcatctcactgaaaaatggccaaatagtttggataattgctttatttaaagctctccaaatgttacacgatgagtttcaccatttttaaatccctttatctgattcactttagcttagcttagcatagatcattgaattgaattagatcattagcatctcactcaaaaatggccaaatagtttggatatttgtcttatttaaagcttcactcttttgaagttacatcatgtactgagcaactgacgtaaaatcaaaggttattttctgtgtattagcattgcgctgcaataactatggtatggcagcaaagttccttgattattacaccagaatgagagtaaactgtagttcctaaccatttcagcacagaaaacgagcaacttttttttttctgttggtcatagtacatgatgtaactacagaaaagtctttaaaactttaaatttggtcattttttgagatgctaatagtctaatccgattcaatgaactatgctaagctaaaagtgctcctgccagaatctgagatcggctgaatggaataaaaaacagtaaacactcaaatgaaactcaattaaaactcaatactttaactctcagggagttgtaaaatgagcctattttattttttaaaaagtggagtgttcctttaaaacaatagttcacccaacattggcaatattgtcattatttactcacatttatgtgtgtgtttttttaatgcaacacaaaatatttaaagcacctttttttttttataaaaatacaccagcataacctattaaacattttctgaagtcatattttagctttctaaacgcttgttatgcactgttttaatacttgcattcttgcatttcacgtggttgcaaatgagaaaacttcagtgaaagagatgataattcatttagtaatgacttaatgttttggtcagttcctcatctaactctgacaattcagaagacttggaatcactcatacatgcgcacacacagtaaaaagctcctagttgacttcacacaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]