LOCUS       XM_003200506            4073 bp    mRNA    linear   VRT 15-JUN-2017
DEFINITION  PREDICTED: Danio rerio E3 ubiquitin-protein ligase TRIM39-like
            (LOC100149991), mRNA.
ACCESSION   XM_003200506
VERSION     XM_003200506.5
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007130.7) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 15, 2017 this sequence version replaced XM_003200506.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Danio rerio Annotation Release 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4073
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="19"
     gene            1..4073
                     /gene="LOC100149991"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100149991"
     CDS             244..1800
                     /gene="LOC100149991"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM39-like"
                     /protein_id="XP_003200554.1"
                     /db_xref="GeneID:100149991"
                     /translation="

MAESSQKGRQIRRKSLDFPPDMSSSGGPLSEELQCSVCLEVFTDPVTTPCGHNFCKTCLNKCWNDSETCSCPYCKETLNQRPDLKINTTLREISDRYKQKSPDGGAVVACDLCEDRTAVKSCLVCQSSYCETHLQPHLKEAALKKHMLMDPVSNLEDYICQTHQRPLELFCRDDQTCVCLECVVTDHKTHNTVPLEMESKEKKAQLMKTQRDMQKMIQDINKEIEDIKHSAEARRRASTEVLELMEEQDSERMSALEQEISELESRNTELEQLSHTEDHLHLIQIHSSLSSFRNTRSRSEISWKTHETLKRALIKLKESIDEKLEQTASEELKWMQQYAVDVTLDPDKGHSDLKLSDDGKQVRFRDILPNYSSKPQRFDRNLFVLGREGFSSGRFYFEVLVKEKTDWTLGVARESTDRNKEITVSPRTGCWTVALINGNDYRACNDPPVSLSLRVTPQRVGVFVDHEEGLVCFYEVETSCHIYSFTGESFHDTLYPFFSPGPNPCGKNSAPLIITPVD"

     misc_feature    325..531
                     /gene="LOC100149991"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:450175"
     misc_feature    order(346..348,355..357,391..393,397..399,406..408,
                     415..417,454..456,463..465)
                     /gene="LOC100149991"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438111"
     misc_feature    568..708
                     /gene="LOC100149991"
                     /note="B-box-type zinc finger superfamily; Region:
                     Bbox_SF; cl00034"
                     /db_xref="CDD:444664"
     misc_feature    718..852
                     /gene="LOC100149991"
                     /note="B-box-type 2 zinc finger found in tripartite
                     motif-containing proteins, TRIM16, TRIM29, TRIM47 and
                     similar proteins; Region: Bbox2_TRIM16-like; cd19769"
                     /db_xref="CDD:380827"
     misc_feature    826..>1254
                     /gene="LOC100149991"
                     /note="DNA repair exonuclease SbcCD ATPase subunit
                     [Replication, recombination and repair]; Region: SbcC;
                     COG0419"
                     /db_xref="CDD:223496"
     misc_feature    1264..1788
                     /gene="LOC100149991"
                     /note="PRY/SPRY domain in tripartite motif-containing
                     (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10,
                     TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38,
                     TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72,
                     NF7 and bloodthirsty; Region: SPRY_PRY_C-I_1; cd13733"
                     /db_xref="CDD:293968"
ORIGIN      

tacaccttgttcaaagaaagtgaaacatctgttcaacatggatgccagtgatcattctatttaacaacataacatttaaaccgttcttatgcagacagaaaacgttaggttatagaaaattaccatcattaatgaaatgccgcggccatagcatttgaacgttaaatgcagtttcatgtcccgccgaattacttgacgcctccatggtcaatataactaagaggcttgaggaggggaagaataatggcagaatcatcacagaaaggaagacaaatcaggagaaagagtttggactttcctccagatatgtcttcctctgggggtccacttagtgaggagctccagtgttctgtttgtctggaggtgttcactgatccggtcaccactccatgtggacacaacttctgcaaaacctgcctgaataaatgctggaatgacagcgagacctgcagctgtccatactgtaaagaaacactcaaccaaagacctgatctgaagatcaacaccacactgagagagatctcagatcgctataaacagaagagtcctgatggaggagctgtagtggcgtgtgatctgtgtgaggacagaacagcagtgaagtcatgtctggtgtgtcagagctcttactgtgaaactcacctgcagcctcatttaaaagaagcagctttgaagaagcacatgctgatggatcctgtgagtaatctggaggactatatctgtcagacacaccagagaccgctggagctcttctgcagagatgatcagacgtgtgtgtgtctagagtgtgttgtgacagaccataaaacacacaacactgttcctctagaaatggagagcaaagaaaagaaagctcagctgatgaagacacagagagacatgcagaagatgatccaagatataaacaaagagattgaggacatcaaacactcagcagaagccagaagaagagcttccactgaagtgctggagttgatggaggaacaggattcagagcggatgtcagcgctggagcaggagatctctgagctggagagcagaaacactgagctggagcagctctcacacactgaagatcatctacacctcatacagattcactcttcactcagcagcttcagaaacaccaggagcaggtctgagatcagctggaagactcacgagactctaaagagagctctgattaaactgaaggagtccatagatgagaaactcgagcaaactgcctctgaagagctgaagtggatgcagcagtatgcagtggatgtgactctggatcctgataaaggtcatagtgacctcaaactttctgatgatggaaaacaagtacgatttagagacattttgccgaattattcatccaaaccacagagatttgacagaaatttatttgttttgggaagggagggattctcctcggggagattttattttgaggtgctggtgaaggaaaagacggactggactttaggagtggccagagaatccactgacaggaataaagagattacagtgagtccccgaactggatgctggactgtggctctgattaatggaaatgattatcgtgcctgcaatgatcctccagtctctctgtctctgagagtgactccgcagcgggtcggtgtgtttgtggatcatgaggaaggtttggtgtgcttttatgaagtggagaccagctgtcatatttattcttttactggtgagtcttttcatgacaccctctatccgttttttagtccaggccctaatccatgtggtaaaaattcagctccgttgattatcacacctgttgattagtcattgaactcaaacccccaaattaggcctgagtcgggaatgaagttttttttttacaaatgagaatgtagcgaagcttaacatttaaagagcccctattttgcattataaaaggtcatactttggttttgggcgtctgagagatacagtgcaagcactgagctataataaatacaggattacaagcctcgcggggggattacaacttaaaacacacaaataaacacatattttgcaaactacacaaaatgaggcaacacttttaatgacacttatatgttctgatccgaaggaagaagaaactggtccatatgaactgtaacagttacaaagtccaggtcaaagtctaatacataatagtctctgctgctcctctaatagcaaacggacgacaagtcgactctttcatttaagaatcaatcgttttaatcatggtgcacttttacacactttgttacacactgcatggaagctcattttcaaaaaccctaatagggtctctttagggcttgtgaaagaagctttcacctttaaaaatgtccataatgttttgcctcattttggtcaaaataaatgaatcaaagtgaaactacaacataccagtacattgcgtgataaactagtttacaatacttatttatttttggtcacacagaatatgacaaactgtgaacatttcacttttatttaacaaaacggttttgtgttctggtttttgatttggccgcggaagcatggctttttcttgaatgcactcacgcatgtcacctcaaatgtttgtttttttaatttattttaaagataactgagcaacaaaaatacataaacattaagatataagttatgactaatgtaattcatttcaaataaagggatatttccaacaaaaacatatgaagtggtcaaaaatgatcaaccttggtggtatggaggtcgaccatcactaatgttactgtgtttaacatccactggtattcacatgcattttaggatagctggcattatacttaacctattgggtatgtgtggaagtatgtggaaggactttaaaacattttttcactggtaaactgtatgccattgcaaaatgagcacgtttaagatctgtttctttaataatcagcgatcttcactgcctgattgatatccaatataaagtggatctcagtttgtacaaaaagcactgcattaaatgacattttctgcattaaatgacattggagcttctgcactagcctgccgatcctggtgggcatgtgcaagtaaacatctttttgtctcgttttacgcttgaacaactaaatgaacctggaagtttatttaactgattgtattttaactactttacaacatccatgctgtaaaaacaaccttgtgaaattgaaaaaagtcacattaaccgtttaccagaaggttatcagtatgggaagaaacactagctgtgcgtatacccaatttactatggagcgcaaataatttaagtcattaactttggatagaaattgtctaatattaataccctgcatatttacacaaacatcacttgttgcactcatagagattgttctcatggtctcctgagtttgttcttctgaggtgacctggcaaaaccgatctccacaagaatgcaagtctattctctgctttttttggatttaaaaaaacagcccatgttttaatcctcgattagtctcacgcaatcatgtgatgcgatttcgcaggtcagagttcaccaagcttgaaatttgcaatgcagcgaactgcgaaaacttgtcgcacgagtttccaatttgccgcattcacatgcgtatttatggaagtctatggggagaaaagtccaatgtgaccacagctttaaacgccttgattatttggatcagctgtgttagaatagggttgaagcaaagctgtgcagaactgcgatcctccaggaattgagtttgagacctttgttttaaggggagatgctccatgttgagactgtgataagccacatagcctgtctgtcttcatcttttattaaattaagctttgtaaaacagtcagtgtaaataacacagttgagatgactactgtaactatgtggctttctggaaagcgctgggatccatacaggtggatgccacacagtgtcaaattcagcactggttttagacatattgaggtaattttacactgttctcatctgaaacgaaaactgaatgcatgtgtagtaaatacacaaaaacacttgtaaataaagcgctgaaataaagacagtttctataaagaca

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