2024-11-01 08:07:21, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NR_045238 73 bp RNA linear VRT 07-JUL-2024 DEFINITION Danio rerio microRNA 430c-3 (mir430c-3), microRNA. ACCESSION NR_045238 VERSION NR_045238.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 73) AUTHORS Hadzhiev,Y., Wheatley,L., Cooper,L., Ansaloni,F., Whalley,C., Chen,Z., Finaurini,S., Gustincich,S., Sanges,R., Burgess,S., Beggs,A. and Muller,F. TITLE The miR-430 locus with extreme promoter density forms a transcription body during the minor wave of zygotic genome activation JOURNAL Dev Cell 58 (2), 155-170 (2023) PUBMED 36693321 REFERENCE 2 (bases 1 to 73) AUTHORS Miao,L., Tang,Y., Bonneau,A.R., Chan,S.H., Kojima,M.L., Pownall,M.E., Vejnar,C.E., Gao,F., Krishnaswamy,S., Hendry,C.E. and Giraldez,A.J. TITLE The landscape of pioneer factor activity reveals the mechanisms of chromatin reprogramming and genome activation JOURNAL Mol Cell 82 (5), 986-1002 (2022) PUBMED 35182480 REFERENCE 3 (bases 1 to 73) AUTHORS Chan,S.H., Tang,Y., Miao,L., Darwich-Codore,H., Vejnar,C.E., Beaudoin,J.D., Musaev,D., Fernandez,J.P., Benitez,M.D.J., Bazzini,A.A., Moreno-Mateos,M.A. and Giraldez,A.J. TITLE Brd4 and P300 Confer Transcriptional Competency during Zygotic Genome Activation JOURNAL Dev Cell 49 (6), 867-881 (2019) PUBMED 31211993 REFERENCE 4 (bases 1 to 73) AUTHORS Hadzhiev,Y., Qureshi,H.K., Wheatley,L., Cooper,L., Jasiulewicz,A., Van Nguyen,H., Wragg,J.W., Poovathumkadavil,D., Conic,S., Bajan,S., Sik,A., Hutvagner,G., Tora,L., Gambus,A., Fossey,J.S. and Muller,F. TITLE A cell cycle-coordinated Polymerase II transcription compartment encompasses gene expression before global genome activation JOURNAL Nat Commun 10 (1), 691 (2019) PUBMED 30741925 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 73) AUTHORS Renaud,L., Silveira,W.A.D., Hazard,E.S., Simpson,J., Falcinelli,S., Chung,D., Carnevali,O. and Hardiman,G. TITLE The Plasticizer Bisphenol A Perturbs the Hepatic Epigenome: A Systems Level Analysis of the miRNome JOURNAL Genes (Basel) 8 (10), 269 (2017) PUBMED 29027980 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 73) AUTHORS Liu,Y., Luo,D., Zhao,H., Zhu,Z., Hu,W. and Cheng,C.H. TITLE Inheritable and precise large genomic deletions of non-coding RNA genes in zebrafish using TALENs JOURNAL PLoS One 8 (10), e76387 (2013) PUBMED 24130773 REMARK Publication Status: Online-Only REFERENCE 7 (bases 1 to 73) AUTHORS Cifuentes,D., Xue,H., Taylor,D.W., Patnode,H., Mishima,Y., Cheloufi,S., Ma,E., Mane,S., Hannon,G.J., Lawson,N.D., Wolfe,S.A. and Giraldez,A.J. TITLE A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity JOURNAL Science 328 (5986), 1694-1698 (2010) PUBMED 20448148 REFERENCE 8 (bases 1 to 73) AUTHORS Griffiths-Jones,S., Grocock,R.J., van Dongen,S., Bateman,A. and Enright,A.J. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue), D140-D144 (2006) PUBMED 16381832 REFERENCE 9 (bases 1 to 73) AUTHORS Chen,P.Y., Manninga,H., Slanchev,K., Chien,M., Russo,J.J., Ju,J., Sheridan,R., John,B., Marks,D.S., Gaidatzis,D., Sander,C., Zavolan,M. and Tuschl,T. TITLE The developmental miRNA profiles of zebrafish as determined by small RNA cloning JOURNAL Genes Dev 19 (11), 1288-1293 (2005) PUBMED 15937218 REFERENCE 10 (bases 1 to 73) AUTHORS Giraldez,A.J., Cinalli,R.M., Glasner,M.E., Enright,A.J., Thomson,J.M., Baskerville,S., Hammond,S.M., Bartel,D.P. and Schier,A.F. TITLE MicroRNAs regulate brain morphogenesis in zebrafish JOURNAL Science 308 (5723), 833-838 (2005) PUBMED 15774722 COMMENT PROVISIONAL REFSEQ: This record is based on preliminary annotation provided by NCBI staff in collaboration with miRBase. The reference sequence was derived from BX088538.26. On Jul 23, 2013 this sequence version replaced NR_045238.1. Summary: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]. Sequence Note: This record represents a predicted microRNA stem-loop as defined by miRBase. Some sequence at the 5' and 3' ends may not be included in the intermediate precursor miRNA produced by Drosha cleavage. ##Evidence-Data-START## Transcript is intronless :: CT710051.2 [ECO:0000345] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-73 BX088538.26 193254-193326 c FEATURES Location/Qualifiers source 1..73 /organism="Danio rerio" /mol_type="transcribed RNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="4" /map="4" gene 1..73 /gene="mir430c-3" /gene_synonym="dre-mir-430c-3" /note="microRNA 430c-3" /db_xref="GeneID:100033794" /db_xref="miRBase:MI0002080" /db_xref="ZFIN:ZDB-MIRNAG-090929-215" precursor_RNA 1..73 /gene="mir430c-3" /gene_synonym="dre-mir-430c-3" /product="microRNA 430c-3" /db_xref="GeneID:100033794" /db_xref="miRBase:MI0002080" /db_xref="ZFIN:ZDB-MIRNAG-090929-215" exon 1..73 /gene="mir430c-3" /gene_synonym="dre-mir-430c-3" /inference="alignment:Splign:2.1.0" ncRNA 9..29 /ncRNA_class="miRNA" /gene="mir430c-3" /gene_synonym="dre-mir-430c-3" /product="dre-miR-430c-5p" /db_xref="miRBase:MIMAT0031929" /db_xref="GeneID:100033794" /db_xref="miRBase:MI0002080" /db_xref="ZFIN:ZDB-MIRNAG-090929-215" ncRNA 45..66 /ncRNA_class="miRNA" /gene="mir430c-3" /gene_synonym="dre-mir-430c-3" /product="dre-miR-430c-3p" /db_xref="miRBase:MIMAT0001425" /db_xref="GeneID:100033794" /db_xref="miRBase:MI0002080" /db_xref="ZFIN:ZDB-MIRNAG-090929-215" ORIGIN
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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