2024-11-01 07:57:50, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_200774 1430 bp mRNA linear VRT 12-APR-2020 DEFINITION Danio rerio required for meiotic nuclear division 5 homolog B (rmnd5b), mRNA. ACCESSION NM_200774 VERSION NM_200774.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 1430) AUTHORS Ma JX, Li JY, Fan DD, Feng W, Lin AF, Xiang LX and Shao JZ. TITLE Identification of DEAD-Box RNA Helicase DDX41 as a Trafficking Protein That Involves in Multiple Innate Immune Signaling Pathways in a Zebrafish Model JOURNAL Front Immunol 9, 1327 (2018) PUBMED 29942316 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1430) AUTHORS Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and Hertzano R. TITLE RFX transcription factors are essential for hearing in mice JOURNAL Nat Commun 6, 8549 (2015) PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1430) AUTHORS Sun XJ, Xu PF, Zhou T, Hu M, Fu CT, Zhang Y, Jin Y, Chen Y, Chen SJ, Huang QH, Liu TX and Chen Z. TITLE Genome-wide survey and developmental expression mapping of zebrafish SET domain-containing genes JOURNAL PLoS ONE 3 (1), e1499 (2008) PUBMED 18231586 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 1430) AUTHORS Song HD, Sun XJ, Deng M, Zhang GW, Zhou Y, Wu XY, Sheng Y, Chen Y, Ruan Z, Jiang CL, Fan HY, Zon LI, Kanki JP, Liu TX, Look AT and Chen Z. TITLE Hematopoietic gene expression profile in zebrafish kidney marrow JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (46), 16240-16245 (2004) PUBMED 15520368 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC059606.1. ##Evidence-Data-START## Transcript exon combination :: BC059606.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1430 /organism="Danio rerio" /mol_type="mRNA" /strain="wild-type" /db_xref="taxon:7955" /chromosome="14" /map="14" gene 1..1430 /gene="rmnd5b" /gene_synonym="zgc:73277" /note="required for meiotic nuclear division 5 homolog B" /db_xref="GeneID:393747" /db_xref="ZFIN:ZDB-GENE-040426-1744" exon 1..22 /gene="rmnd5b" /gene_synonym="zgc:73277" /inference="alignment:Splign:2.1.0" exon 23..196 /gene="rmnd5b" /gene_synonym="zgc:73277" /inference="alignment:Splign:2.1.0" misc_feature 46..48 /gene="rmnd5b" /gene_synonym="zgc:73277" /note="upstream in-frame stop codon" CDS 58..1233 /gene="rmnd5b" /gene_synonym="zgc:73277" /EC_number="2.3.2.27" /codon_start=1 /product="E3 ubiquitin-protein transferase RMND5B" /protein_id="NP_957068.1" /db_xref="GeneID:393747" /db_xref="ZFIN:ZDB-GENE-040426-1744" /translation="
MEQCACVERELEKVLHRFVTYGHQSEERLDELLNNVCELRSRLLAYGVQDADLSVLHQTMAQCCKEIKETVQMLASRHKDIHGSVSKVGKAIDRNFDAEVSAVVAENVWDSPERQKYLSETIVEHLYRQGMLSVAEDLCQESGVVIDMSMKQPFLELNRILEALRTQDLRPALEWAVTNRQRLLDLNSTLEFKLHRLYFISLLNGGIGKQQEALQYARHFQPFASQHQRDIQILMGSLVYLRHGIENSPYRSLLETDQWAEICNIFTRDACALLGLSVESPLSVSFASGCMALPVLMNIKQVIEQRQCSGVWTHKDELPIEIDLGKKCWYHSVFACPILRQQTSESNPPMKLICGHVISRDALNKLTNAGKLKCPYCPMEQNPSDAKQIYF"
misc_feature 514..948 /gene="rmnd5b" /gene_synonym="zgc:73277" /note="CTLH/CRA C-terminal to LisH motif domain; Region: CTLH; pfam10607" /db_xref="CDD:402305" misc_feature 1054..1230 /gene="rmnd5b" /gene_synonym="zgc:73277" /note="Degenerated RING finger found in protein RMD5 homolog B (RMD5B); Region: dRING_RMD5B; cd16795" /db_xref="CDD:438449" exon 197..339 /gene="rmnd5b" /gene_synonym="zgc:73277" /inference="alignment:Splign:2.1.0" exon 340..477 /gene="rmnd5b" /gene_synonym="zgc:73277" /inference="alignment:Splign:2.1.0" exon 478..578 /gene="rmnd5b" /gene_synonym="zgc:73277" /inference="alignment:Splign:2.1.0" exon 579..745 /gene="rmnd5b" /gene_synonym="zgc:73277" /inference="alignment:Splign:2.1.0" exon 746..911 /gene="rmnd5b" /gene_synonym="zgc:73277" /inference="alignment:Splign:2.1.0" exon 912..1014 /gene="rmnd5b" /gene_synonym="zgc:73277" /inference="alignment:Splign:2.1.0" exon 1015..1169 /gene="rmnd5b" /gene_synonym="zgc:73277" /inference="alignment:Splign:2.1.0" exon 1170..1411 /gene="rmnd5b" /gene_synonym="zgc:73277" /inference="alignment:Splign:2.1.0" ORIGIN
ctggtgaactggtgtcaaacaggacgtggtgtgtgtgtgtgtttgtaagctgtgctgatggagcagtgtgcgtgtgtggagcgagaactggagaaggtgctgcaccggttcgtcacatatggacatcagtcagaggaacggctggacgaactcctaaataacgtctgtgagctgaggagtcgactgctcgcttatggtgttcaggatgcagatctctcagtgctgcatcaaaccatggcccagtgctgtaaggagatcaaggaaaccgtgcagatgcttgcctccagacacaaggacatccacggcagcgtgtccaaagtgggcaaagccatcgacagaaattttgatgcggaggtgagtgcagtagttgctgagaatgtgtgggactctccagagaggcagaaatacctcagtgaaaccatcgttgaacacctgtatcgacagggcatgctgagtgttgcagaagacctctgccaggagtctggtgtagtaatcgacatgagcatgaaacaaccctttctggagctcaaccgcattttagaggctttaagaacacaagatctcagaccggctttagaatgggcagtgacgaaccgtcagcggctgctggatctgaacagcacccttgagtttaagctgcacagactgtatttcatcagcctgctcaatgggggcatcggcaaacagcaggaggcgctacagtacgctcgacatttccaacccttcgcctcacagcatcagagagatattcagatcttaatgggcagtcttgtgtacctccgccatgggatcgagaactctccgtaccgcagtcttctggagacggaccagtgggctgagatctgtaacatcttcacacgcgacgcttgtgctctgcttggcctctctgtagagtctccactcagtgtcagttttgcgtccggctgtatggcacttcctgtgctcatgaacatcaagcaggtcattgaacagagacagtgcagcggggtttggacacataaggatgagctgccaattgaaatagacctgggaaagaagtgctggtatcactcagtgttcgcctgtcctatcctgaggcagcaaacatcagagagcaatcctcccatgaagctcatctgtggacacgtcatatccagagacgctctgaacaaactcaccaatgctggaaagcttaaatgcccgtattgtccaatggagcagaatccctcagatgccaaacagatctacttctgatgtctctctcctctctcttctggatgaaacgttgaaggcagttccgatgattctccttcaaaggcaatgatgagcctccagtggtggattcaacccctgaaaacgccgccaccttcctctccaaagctttcgtttccagaggcgggtggccacggcagcgttcctgtagatgcaaagttaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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