LOCUS       NM_200618               1966 bp    mRNA    linear   VRT 20-FEB-2022
DEFINITION  Danio rerio LRAT domain containing 1 (lratd1), mRNA.
ACCESSION   NM_200618
VERSION     NM_200618.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1966)
  AUTHORS   Hoffmann S, Schmitteckert S, Raedecke K, Rheinert D, Diebold S,
            Roeth R, Weiss B, Granzow M, Niesler B, Griesbeck A, Eckstein V,
            Zimmermann WH, Just S and Rappold GA.
  TITLE     Network-driven discovery yields new insight into Shox2-dependent
            cardiac rhythm control
  JOURNAL   Biochim Biophys Acta Gene Regul Mech 1864 (4-5), 194702 (2021)
   PUBMED   33706013
REFERENCE   2  (bases 1 to 1966)
  AUTHORS   Li RA, Traver D, Matthes T and Bertrand JY.
  TITLE     Ndrg1b and fam49ab modulate the PTEN pathway to control T-cell
            lymphopoiesis in the zebrafish
  JOURNAL   Blood 128 (26), 3052-3060 (2016)
   PUBMED   27827822
REFERENCE   3  (bases 1 to 1966)
  AUTHORS   Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M,
            Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD,
            Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov
            GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and
            Hertzano R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1966)
  AUTHORS   Song HD, Sun XJ, Deng M, Zhang GW, Zhou Y, Wu XY, Sheng Y, Chen Y,
            Ruan Z, Jiang CL, Fan HY, Zon LI, Kanki JP, Liu TX, Look AT and
            Chen Z.
  TITLE     Hematopoietic gene expression profile in zebrafish kidney marrow
  JOURNAL   Proc Natl Acad Sci U S A 101 (46), 16240-16245 (2004)
   PUBMED   15520368
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC056807.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC056807.1, EH996649.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2168446, SAMEA2168447
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1966
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="AB"
                     /db_xref="taxon:7955"
                     /chromosome="20"
                     /map="20"
     gene            1..1966
                     /gene="lratd1"
                     /gene_synonym="fam84a; zgc:63724"
                     /note="LRAT domain containing 1"
                     /db_xref="GeneID:393590"
                     /db_xref="ZFIN:ZDB-GENE-040426-1247"
     exon            1..135
                     /gene="lratd1"
                     /gene_synonym="fam84a; zgc:63724"
                     /inference="alignment:Splign:2.1.0"
     exon            136..1944
                     /gene="lratd1"
                     /gene_synonym="fam84a; zgc:63724"
                     /inference="alignment:Splign:2.1.0"
     CDS             173..955
                     /gene="lratd1"
                     /gene_synonym="fam84a; zgc:63724"
                     /note="family with sequence similarity 84, member A"
                     /codon_start=1
                     /product="protein LRATD1"
                     /protein_id="NP_956912.1"
                     /db_xref="GeneID:393590"
                     /db_xref="ZFIN:ZDB-GENE-040426-1247"
                     /translation="

MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEELDDRSQSDSFKDNNSPSKDGPVARNEIEYTAFCCQECIYSKLRENEDLNVYSVKTLLTMCKPGDLLELVANAQPPHWAIFEGEDQVIHLYKGEIRKDSLFEISCGRQARIVNNRYRYRPLPADLVMQNASGHVGLSSGEICWTNSESFAAWCRFGKREFKAGGEVHSVEQRYFLKVHLSESTAHTLMFRSLEEMIRERRRVDASGILKELSLVTGKE"

     misc_feature    527..769
                     /gene="lratd1"
                     /gene_synonym="fam84a; zgc:63724"
                     /note="NlpC/P60 family; Region: NLPC_P60; cl21534"
                     /db_xref="CDD:451296"
ORIGIN      

gagaatccagtgtaccttggaggacacgcgagggggaggaaagcgcgtctgttttggagaccttgcggaatacacacagcacaagcaccgatggagagaaaggaccattagccatagtcctggggaaatacgcagaagcagtattccatgtctctcctctgccctgttattgatgggaaaccaactggaccggatcacccacctgaactacagcgagctacccaccggggatccatcgggcatcgagaaggacgagttacgtgttggcgtggcgtatttcttttccgatgaggaggaagagctggatgatcgatcgcagtcggacagctttaaagacaacaacagcccgagcaaagacggtccggttgcgcgcaacgaaatcgagtacacggctttctgctgccaggaatgtatttactccaaactgcgagaaaacgaggacctgaatgtttattcggtgaaaactttattgaccatgtgcaaaccaggggatctactggagttagtggccaacgcacaacccccgcactgggcgatcttcgaaggggaggaccaggttattcacctttacaagggggagattcgcaaggacagcttgtttgagatcagctgcggtcggcaggctaggatagtgaacaatcggtaccgctaccggccgctgcccgctgatttagtgatgcagaacgcgagcgggcacgtggggctcagcagtggcgagatttgctggacgaactcggaaagtttcgcagcctggtgccgtttcggcaagcgggagtttaaagcgggcggggaggtgcactccgtcgagcagcgctactttctgaaggtgcacctgtccgagagcaccgcgcacacgctcatgttccgcagcctggaggagatgatacgcgagagacggcgcgtggacgccagcggcatcctgaaggagctgtcgctggtgaccggcaaggaatgagcgcttgggactctctgcatgccttgagcaagggctgcctataccttcgtttcaggactttgggagggttgttgcgtatttgtgtgaacatgttttggcaaagacaacgccccttttggttgtgctgtgagaaccgatggccccactaaagtcacccagtacctttaaaaaggaaaaagataaaccataaggtgagccctcatcacagatatcgcccatgaacctcagcccctctcaaattcgcacccgagccctgctgcggcagatggtgaccacgacgcgttcatgtctgtggcaagccgttttgacatttactccttataactaatatgttgtgtttaatactactattcttatatgttctagtgcctattccagttgttagcaaaatctgtagtcatactagtgattgaaaccatctcttcgactagtcataacatatgaccagtgaaaagcaaatgttattaagacaactgagatataaggcctaatggaaactggttaaaatcggtctaataaatggttactaagcaaactgcatagttatctgaaacacagatccacaaatggaaattgtgtatcgttaggaataattggtttgcaggaaaatactagttgaatggtggataattggtgaaactggtttcacttcttgctcataacttgataaaacgaatactggtaacctaaacactttaattagtttaaaggaataattgtgaaacaacttgccacatgtatcttatttgactgaactcgagagctttaataatattaaacgtggagctctggtattgcgcatctgtccagctgcattagttcctctaagcccctacaggcgacaacacacgagcctttgttttcattctgttaccaacaaatgcagcgaacattcttctgtttttggagtccatatttttgtatttcagttagtacgtttaaaaaactgtttttatttaaataaacgtagattgccctatgaaaaatgcaaaaaaaaaaaaaaaaaaaaaa

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