2024-11-01 08:21:11, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_200618 1966 bp mRNA linear VRT 20-FEB-2022 DEFINITION Danio rerio LRAT domain containing 1 (lratd1), mRNA. ACCESSION NM_200618 VERSION NM_200618.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 1966) AUTHORS Hoffmann S, Schmitteckert S, Raedecke K, Rheinert D, Diebold S, Roeth R, Weiss B, Granzow M, Niesler B, Griesbeck A, Eckstein V, Zimmermann WH, Just S and Rappold GA. TITLE Network-driven discovery yields new insight into Shox2-dependent cardiac rhythm control JOURNAL Biochim Biophys Acta Gene Regul Mech 1864 (4-5), 194702 (2021) PUBMED 33706013 REFERENCE 2 (bases 1 to 1966) AUTHORS Li RA, Traver D, Matthes T and Bertrand JY. TITLE Ndrg1b and fam49ab modulate the PTEN pathway to control T-cell lymphopoiesis in the zebrafish JOURNAL Blood 128 (26), 3052-3060 (2016) PUBMED 27827822 REFERENCE 3 (bases 1 to 1966) AUTHORS Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and Hertzano R. TITLE RFX transcription factors are essential for hearing in mice JOURNAL Nat Commun 6, 8549 (2015) PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 1966) AUTHORS Song HD, Sun XJ, Deng M, Zhang GW, Zhou Y, Wu XY, Sheng Y, Chen Y, Ruan Z, Jiang CL, Fan HY, Zon LI, Kanki JP, Liu TX, Look AT and Chen Z. TITLE Hematopoietic gene expression profile in zebrafish kidney marrow JOURNAL Proc Natl Acad Sci U S A 101 (46), 16240-16245 (2004) PUBMED 15520368 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC056807.1. ##Evidence-Data-START## Transcript exon combination :: BC056807.1, EH996649.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1966 /organism="Danio rerio" /mol_type="mRNA" /strain="AB" /db_xref="taxon:7955" /chromosome="20" /map="20" gene 1..1966 /gene="lratd1" /gene_synonym="fam84a; zgc:63724" /note="LRAT domain containing 1" /db_xref="GeneID:393590" /db_xref="ZFIN:ZDB-GENE-040426-1247" exon 1..135 /gene="lratd1" /gene_synonym="fam84a; zgc:63724" /inference="alignment:Splign:2.1.0" exon 136..1944 /gene="lratd1" /gene_synonym="fam84a; zgc:63724" /inference="alignment:Splign:2.1.0" CDS 173..955 /gene="lratd1" /gene_synonym="fam84a; zgc:63724" /note="family with sequence similarity 84, member A" /codon_start=1 /product="protein LRATD1" /protein_id="NP_956912.1" /db_xref="GeneID:393590" /db_xref="ZFIN:ZDB-GENE-040426-1247" /translation="
MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEELDDRSQSDSFKDNNSPSKDGPVARNEIEYTAFCCQECIYSKLRENEDLNVYSVKTLLTMCKPGDLLELVANAQPPHWAIFEGEDQVIHLYKGEIRKDSLFEISCGRQARIVNNRYRYRPLPADLVMQNASGHVGLSSGEICWTNSESFAAWCRFGKREFKAGGEVHSVEQRYFLKVHLSESTAHTLMFRSLEEMIRERRRVDASGILKELSLVTGKE"
misc_feature 527..769 /gene="lratd1" /gene_synonym="fam84a; zgc:63724" /note="NlpC/P60 family; Region: NLPC_P60; cl21534" /db_xref="CDD:473902" ORIGIN
gagaatccagtgtaccttggaggacacgcgagggggaggaaagcgcgtctgttttggagaccttgcggaatacacacagcacaagcaccgatggagagaaaggaccattagccatagtcctggggaaatacgcagaagcagtattccatgtctctcctctgccctgttattgatgggaaaccaactggaccggatcacccacctgaactacagcgagctacccaccggggatccatcgggcatcgagaaggacgagttacgtgttggcgtggcgtatttcttttccgatgaggaggaagagctggatgatcgatcgcagtcggacagctttaaagacaacaacagcccgagcaaagacggtccggttgcgcgcaacgaaatcgagtacacggctttctgctgccaggaatgtatttactccaaactgcgagaaaacgaggacctgaatgtttattcggtgaaaactttattgaccatgtgcaaaccaggggatctactggagttagtggccaacgcacaacccccgcactgggcgatcttcgaaggggaggaccaggttattcacctttacaagggggagattcgcaaggacagcttgtttgagatcagctgcggtcggcaggctaggatagtgaacaatcggtaccgctaccggccgctgcccgctgatttagtgatgcagaacgcgagcgggcacgtggggctcagcagtggcgagatttgctggacgaactcggaaagtttcgcagcctggtgccgtttcggcaagcgggagtttaaagcgggcggggaggtgcactccgtcgagcagcgctactttctgaaggtgcacctgtccgagagcaccgcgcacacgctcatgttccgcagcctggaggagatgatacgcgagagacggcgcgtggacgccagcggcatcctgaaggagctgtcgctggtgaccggcaaggaatgagcgcttgggactctctgcatgccttgagcaagggctgcctataccttcgtttcaggactttgggagggttgttgcgtatttgtgtgaacatgttttggcaaagacaacgccccttttggttgtgctgtgagaaccgatggccccactaaagtcacccagtacctttaaaaaggaaaaagataaaccataaggtgagccctcatcacagatatcgcccatgaacctcagcccctctcaaattcgcacccgagccctgctgcggcagatggtgaccacgacgcgttcatgtctgtggcaagccgttttgacatttactccttataactaatatgttgtgtttaatactactattcttatatgttctagtgcctattccagttgttagcaaaatctgtagtcatactagtgattgaaaccatctcttcgactagtcataacatatgaccagtgaaaagcaaatgttattaagacaactgagatataaggcctaatggaaactggttaaaatcggtctaataaatggttactaagcaaactgcatagttatctgaaacacagatccacaaatggaaattgtgtatcgttaggaataattggtttgcaggaaaatactagttgaatggtggataattggtgaaactggtttcacttcttgctcataacttgataaaacgaatactggtaacctaaacactttaattagtttaaaggaataattgtgaaacaacttgccacatgtatcttatttgactgaactcgagagctttaataatattaaacgtggagctctggtattgcgcatctgtccagctgcattagttcctctaagcccctacaggcgacaacacacgagcctttgttttcattctgttaccaacaaatgcagcgaacattcttctgtttttggagtccatatttttgtatttcagttagtacgtttaaaaaactgtttttatttaaataaacgtagattgccctatgaaaaatgcaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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