2024-11-01 08:34:07, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_200189 1711 bp mRNA linear VRT 15-OCT-2021 DEFINITION Danio rerio cytochrome b5 reductase 1 (cyb5r1), mRNA. ACCESSION NM_200189 VERSION NM_200189.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 1711) AUTHORS Bayes A, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD and Grant SG. TITLE Evolution of complexity in the zebrafish synapse proteome JOURNAL Nat Commun 8, 14613 (2017) PUBMED 28252024 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1711) AUTHORS Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and Bobe J. TITLE Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database JOURNAL BMC Genomics 17, 368 (2016) PUBMED 27189481 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1711) AUTHORS Tzung KW, Goto R, Saju JM, Sreenivasan R, Saito T, Arai K, Yamaha E, Hossain MS, Calvert MEK and Orban L. TITLE Early depletion of primordial germ cells in zebrafish promotes testis formation JOURNAL Stem Cell Reports 4 (1), 61-73 (2015) PUBMED 25434820 REMARK Erratum:[Stem Cell Reports. 2015 Jul 14;5(1):156. PMID: 28039741] REFERENCE 4 (bases 1 to 1711) AUTHORS Chen YS, Luo WI, Lee TL, Yu SS and Chang CY. TITLE Identification of the proteins required for fatty acid desaturation in zebrafish (Danio rerio) JOURNAL Biochem Biophys Res Commun 440 (4), 671-676 (2013) PUBMED 24103751 REFERENCE 5 (bases 1 to 1711) AUTHORS Nishio S, Gibert Y, Bernard L, Brunet F, Triqueneaux G and Laudet V. TITLE Adiponectin and adiponectin receptor genes are coexpressed during zebrafish embryogenesis and regulated by food deprivation JOURNAL Dev Dyn 237 (6), 1682-1690 (2008) PUBMED 18489000 REFERENCE 6 (bases 1 to 1711) AUTHORS van der Meulen T, Schipper H, van den Boogaart JG, Huising MO, Kranenbarg S and van Leeuwen JL. TITLE Endurance exercise differentially stimulates heart and axial muscle development in zebrafish (Danio rerio) JOURNAL Am J Physiol Regul Integr Comp Physiol 291 (4), R1040-R1048 (2006) PUBMED 16966387 REFERENCE 7 (bases 1 to 1711) AUTHORS van der Meulen T, Schipper H, van Leeuwen JL and Kranenbarg S. TITLE Effects of decreased muscle activity on developing axial musculature in nicb107 mutant zebrafish (Danio rerio) JOURNAL J Exp Biol 208 (Pt 19), 3675-3687 (2005) PUBMED 16169945 REFERENCE 8 (bases 1 to 1711) AUTHORS Song HD, Sun XJ, Deng M, Zhang GW, Zhou Y, Wu XY, Sheng Y, Chen Y, Ruan Z, Jiang CL, Fan HY, Zon LI, Kanki JP, Liu TX, Look AT and Chen Z. TITLE Hematopoietic gene expression profile in zebrafish kidney marrow JOURNAL Proc Natl Acad Sci U S A 101 (46), 16240-16245 (2004) PUBMED 15520368 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY398332.1. On Feb 9, 2004 this sequence version replaced NM_200189.1. ##Evidence-Data-START## Transcript exon combination :: AY398332.1, BC045880.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1711 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /chromosome="11" /map="11" gene 1..1711 /gene="cyb5r1" /gene_synonym="dia1; wu:fb13e02; wu:fb15h03; zgc:56042" /note="cytochrome b5 reductase 1" /db_xref="GeneID:336553" /db_xref="ZFIN:ZDB-GENE-030131-8497" exon 1..74 /gene="cyb5r1" /gene_synonym="dia1; wu:fb13e02; wu:fb15h03; zgc:56042" /inference="alignment:Splign:2.1.0" misc_feature 18..20 /gene="cyb5r1" /gene_synonym="dia1; wu:fb13e02; wu:fb15h03; zgc:56042" /note="upstream in-frame stop codon" CDS 60..974 /gene="cyb5r1" /gene_synonym="dia1; wu:fb13e02; wu:fb15h03; zgc:56042" /EC_number="1.6.2.2" /note="diaphorase (NADH) (cytochrome b-5 reductase)" /codon_start=1 /product="NADH-cytochrome b5 reductase 1" /protein_id="NP_956483.1" /db_xref="GeneID:336553" /db_xref="ZFIN:ZDB-GENE-030131-8497" /translation="
MSYAMSTTVAVTVGVVLVSTAGLLGYYYFNRKRKILITLIDPSEKYKLRLVDKEIISHDTRRFRFALPSPEHVLGLPVGKHVYLSARIDGNLIVRPYTPVSSDDDKGFVDLVVKIYFRDVHPKFPEGGKMSQYLESLRIGDVIDFRGPGGLLEYKGAGRLDIQADKKAPAETKTVKSLGLIAGGTGITPMLQLIRDITKNPNDTTTCSLLFANQTEKDILLKDELEEIQARHSDRFKLWFTVDRAPADWEYSQGFISAEMIQDHLPPPSDDSMILMCGPPPMIQFACNPNLDKLGYRQSQRFAY"
misc_feature <174..971 /gene="cyb5r1" /gene_synonym="dia1; wu:fb13e02; wu:fb15h03; zgc:56042" /note="nitrate reductase [NADPH]; Region: PLN02252" /db_xref="CDD:215141" exon 75..221 /gene="cyb5r1" /gene_synonym="dia1; wu:fb13e02; wu:fb15h03; zgc:56042" /inference="alignment:Splign:2.1.0" exon 222..294 /gene="cyb5r1" /gene_synonym="dia1; wu:fb13e02; wu:fb15h03; zgc:56042" /inference="alignment:Splign:2.1.0" exon 295..401 /gene="cyb5r1" /gene_synonym="dia1; wu:fb13e02; wu:fb15h03; zgc:56042" /inference="alignment:Splign:2.1.0" exon 402..531 /gene="cyb5r1" /gene_synonym="dia1; wu:fb13e02; wu:fb15h03; zgc:56042" /inference="alignment:Splign:2.1.0" exon 532..615 /gene="cyb5r1" /gene_synonym="dia1; wu:fb13e02; wu:fb15h03; zgc:56042" /inference="alignment:Splign:2.1.0" exon 616..701 /gene="cyb5r1" /gene_synonym="dia1; wu:fb13e02; wu:fb15h03; zgc:56042" /inference="alignment:Splign:2.1.0" exon 702..801 /gene="cyb5r1" /gene_synonym="dia1; wu:fb13e02; wu:fb15h03; zgc:56042" /inference="alignment:Splign:2.1.0" exon 802..1690 /gene="cyb5r1" /gene_synonym="dia1; wu:fb13e02; wu:fb15h03; zgc:56042" /inference="alignment:Splign:2.1.0" ORIGIN
aaaataaatgtttagtctgaaggttttctctgaccgacgcttgtagtctatccctcgtcatgagctacgcgatgtccaccacagtagcagtgacggttggagtggtgctggtgtcaacagctgggctgctgggttattattacttcaacaggaagaggaaaatactcataaccctaattgatccttctgaaaaatacaagttgcgactagtagacaaagagatcataagtcatgatacccggagatttcggttcgccctgcctagtccagagcatgttttgggattaccagtgggcaagcatgtttatctctctgccaggattgatgggaatctgattgtgcgtccttacacaccggtgtccagcgatgatgacaaaggattcgttgatctagtcgtgaagatttattttagggatgtgcacccaaagtttcctgaagggggaaagatgtcccaatacctggagagtttgcggatcggagatgtgattgacttcagaggaccaggaggtttgctggagtacaagggcgcaggtcgcttggatatacaggccgataagaaggcccctgcagagaccaagactgtaaaatctctgggtcttattgctggaggaacaggcattacgccaatgttgcagctgattcgtgacatcaccaagaacccaaatgacacgactacatgcagcctgttgtttgccaatcagactgagaaggacattctgctgaaggatgagctggaggagattcaggccaggcattctgatcgcttcaaactctggttcaccgtggaccgagctccggcagattgggagtacagtcagggcttcatcagcgctgagatgattcaggaccatcttcctccacccagtgatgactctatgatcctgatgtgtggtccacctcctatgatccagttcgcctgtaatccaaacctggacaagctgggctacaggcagagccagcgcttcgcctattaggccgttctcaatgtttagggccagaccacaaattactccaaagatactgagttgcgcacaatcgtatttggcattttaaatctgatcttacaaagcaaatagctcttttatggacagtatataatacacattaaatgtttaagtgctagactgtccagagataattggttcttcatattaaaagcctttaattcagtaataagaaacatgatctgctgtctcctcaggctttatattcaccgttgtggctcatgataagatgctgatactacaaaaacaaacgcacttaaaaaaagcaccagtgctgcttgctggtttaatgctgaatattatattcatgtgcctatatgtgagctatgagttcattgttgtatgtgcacattgttatatgctgtcactggagtatttttgtatgcatgttgtactccttatgtttgtctcgttaatcgtatttaaatttaaaaagcaacacagttgttttgtatgaaatgcactaaagtaaaagcatattaaagtgttttcactgggagcttgtattattttcttctttaatgtggccaaataagagttgttttggttgtgatgtgctcacatttgcattgatattataaaaactgacttgtatttgaatctaaaaagcaatcaagttgttttatataaaatgtatgtatggaaaggtaaaacaagagatcattattaaacatattaaacaatcaaaaaaaaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]