LOCUS       NM_131872               1824 bp    mRNA    linear   VRT 04-DEC-2023
DEFINITION  Danio rerio vimentin (vim), mRNA.
ACCESSION   NM_131872
VERSION     NM_131872.2
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1824)
  AUTHORS   Aragona M, Porcino C, Briglia M, Mhalhel K, Abbate F, Levanti M,
            Montalbano G, Laura R, Lauriano ER, Germana A and Guerrera MC.
  TITLE     Vimentin Localization in the Zebrafish Oral Cavity: A Potential
            Role in Taste Buds Regeneration
  JOURNAL   Int J Mol Sci 24 (21), 15619 (2023)
   PUBMED   37958598
  REMARK    GeneRIF: Vimentin Localization in the Zebrafish Oral Cavity: A
            Potential Role in Taste Buds Regeneration.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1824)
  AUTHORS   Liu Y, Kossack ME, McFaul ME, Christensen LN, Siebert S, Wyatt SR,
            Kamei CN, Horst S, Arroyo N, Drummond IA, Juliano CE and Draper BW.
  TITLE     Single-cell transcriptome reveals insights into the development and
            function of the zebrafish ovary
  JOURNAL   Elife 11, e76014 (2022)
   PUBMED   35588359
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1824)
  AUTHORS   Cocchiaro P, Di Donato V, Rubbini D, Mastropasqua R, Allegretti M,
            Mantelli F, Aramini A and Brandolini L.
  TITLE     Intravitreal Administration of rhNGF Enhances Regenerative
            Processes in a Zebrafish Model of Retinal Degeneration
  JOURNAL   Front Pharmacol 13, 822359 (2022)
   PUBMED   35330834
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1824)
  AUTHORS   Kayman Kurekci G, Kural Mangit E, Koyunlar C, Unsal S, Saglam B,
            Ergin B, Gizer M, Uyanik I, Boustanabadimaralan Duz N, Korkusuz P,
            Talim B, Purali N, Hughes SM and Dincer PR.
  TITLE     Knockout of zebrafish desmin genes does not cause skeletal muscle
            degeneration but alters calcium flux
  JOURNAL   Sci Rep 11 (1), 7505 (2021)
   PUBMED   33820917
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1824)
  AUTHORS   Peng Y, Wang W, Fang Y, Hu H, Chang N, Pang M, Hu YF, Li X, Long H,
            Xiong JW and Zhang R.
  TITLE     Inhibition of TGF-beta/Smad3 Signaling Disrupts Cardiomyocyte Cell
            Cycle Progression and Epithelial-Mesenchymal Transition-Like
            Response During Ventricle Regeneration
  JOURNAL   Front Cell Dev Biol 9, 632372 (2021)
   PUBMED   33816481
  REMARK    Erratum:[Front Cell Dev Biol. 2021 May 14;9:699796. PMID: 34055811]
            Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1824)
  AUTHORS   Greiling TM, Houck SA and Clark JI.
  TITLE     The zebrafish lens proteome during development and aging
  JOURNAL   Mol Vis 15, 2313-2325 (2009)
   PUBMED   19936306
  REMARK    Publication Status: Online-Only
REFERENCE   7  (bases 1 to 1824)
  AUTHORS   Lemeer S, Jopling C, Gouw J, Mohammed S, Heck AJ, Slijper M and den
            Hertog J.
  TITLE     Comparative phosphoproteomics of zebrafish Fyn/Yes morpholino
            knockdown embryos
  JOURNAL   Mol Cell Proteomics 7 (11), 2176-2187 (2008)
   PUBMED   18550893
REFERENCE   8  (bases 1 to 1824)
  AUTHORS   Kassen SC, Ramanan V, Montgomery JE, T Burket C, Liu CG, Vihtelic
            TS and Hyde DR.
  TITLE     Time course analysis of gene expression during light-induced
            photoreceptor cell death and regeneration in albino zebrafish
  JOURNAL   Dev Neurobiol 67 (8), 1009-1031 (2007)
   PUBMED   17565703
REFERENCE   9  (bases 1 to 1824)
  AUTHORS   Vihtelic TS, Fadool JM, Gao J, Thornton KA, Hyde DR and Wistow G.
  TITLE     Expressed sequence tag analysis of zebrafish eye tissues for
            NEIBank
  JOURNAL   Mol Vis 11, 1083-1100 (2005)
   PUBMED   16379021
  REMARK    Publication Status: Online-Only
REFERENCE   10 (bases 1 to 1824)
  AUTHORS   Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, Nix R, Kelly
            PD, Chu F, Postlethwait JH and Talbot WS.
  TITLE     The zebrafish gene map defines ancestral vertebrate chromosomes
  JOURNAL   Genome Res 15 (9), 1307-1314 (2005)
   PUBMED   16109975
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC053115.1.
            
            On Dec 20, 2003 this sequence version replaced NM_131872.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC053115.1, GDQQ01014487.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2168446, SAMEA2168447
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1824
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="24"
                     /map="24"
     gene            1..1824
                     /gene="vim"
                     /gene_synonym="cb28"
                     /note="vimentin"
                     /db_xref="GeneID:140599"
                     /db_xref="ZFIN:ZDB-GENE-011212-3"
     exon            1..580
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    33..35
                     /gene="vim"
                     /gene_synonym="cb28"
                     /note="upstream in-frame stop codon"
     CDS             45..1412
                     /gene="vim"
                     /gene_synonym="cb28"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="NP_571947.1"
                     /db_xref="GeneID:140599"
                     /db_xref="ZFIN:ZDB-GENE-011212-3"
                     /translation="

MASRTSTSSYKRMFGGERPAAARSTFSSRQYSSPVRVSSSRTSYNYSSAPPSVYASKGLRVRSGAPLPRLATDTLDFGLAEAINTEFKANRTNEKAEMQHLNDRFASYIDKVRFLEQQNKILIAELEQLRGKGASRVGDLYEDEMRELRRQVDQLTGEKSKVEVDRDNLGEDIERLKERLQEEMLQREDAENSLRSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEELAEMQIQMQEQHLQIDMEVTKPDLTAALKDVRQQYETLASRNLQESEDWYKSKFADLSEAAARNNEAIRLAKQEANDYRRQLQALTCDLEALKGTNESLERQMRELEDSFSMEASGYQDTIGRLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITSPFPNFSSLSLRESMKETRPLIDNLSKKVVIKTIETRDGHIINESTQNEDLE"

     misc_feature    57..320
                     /gene="vim"
                     /gene_synonym="cb28"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    321..1247
                     /gene="vim"
                     /gene_synonym="cb28"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
     exon            581..641
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
     exon            642..737
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
     exon            738..899
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
     exon            900..1025
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
     exon            1026..1246
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
     exon            1247..1290
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
     exon            1291..1373
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
     exon            1374..1797
                     /gene="vim"
                     /gene_synonym="cb28"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cgacatttagacttcaacaataacccgcaaactaaaggattaccatggccagtcgaacaagcacatcttcctataaaaggatgttcggcggggagcgtcccgcggcggcgcggtccactttctccagccggcagtacagcagcccagtgcgcgtctcctcctcgcgcacgtcctacaactacagcagcgcgcctccatccgtgtacgcgagtaaaggcttgagagtgcgctccggcgcgccccttcccagactcgccaccgacactctggatttcgggcttgccgaggccataaacaccgagtttaaagccaaccggaccaatgagaaagcggagatgcagcacctcaacgaccggttcgccagttacatagacaaagtgcgctttctggagcagcagaacaagatcctgatcgcggagctggagcagctgcggggcaaaggagcgtcccgggtcggagatctgtacgaggatgagatgcgggagctgcggagacaggtggatcagctgaccggggaaaagagcaaagtggaggtggaccgggacaacctaggggaggacatcgagcgcctcaaggagagacttcaagaagagatgcttcaaagagaagatgctgagaacagcctccgcagcttcagacaggatgttgataacgcctctctggctcgtctggacctggagagaaaggtggagtccctgcaagaagagattgctttcttgaagaagcttcacgatgaggaacttgctgagatgcagatccagatgcaggagcagcatttgcagatcgatatggaagtgaccaaacctgacctgaccgctgctctgaaagacgtccggcagcagtacgagactctggcctccagaaacctgcaggagtctgaggattggtacaaatccaagtttgctgacctgtcagaagctgctgcccgaaacaatgaagccatccgtctggccaaacaggaggccaatgattaccgtcgccagctccaggctctcacttgtgacttggaagctctcaaaggaacgaatgagtctctggagcgtcagatgagagaactagaggacagcttctccatggaggcgtctggttatcaggacaccatcggccgtctggaggacgacattcgcaacatgaaggatgagatggcacgtcatctgcgggaataccaggatctgctcaatgttaaaatggccctggatattgagatcgccacctacaggaaactgctagaaggagaagaaagcaggatcacctcaccatttcccaacttttcatcattaagcctgcgagagtccatgaaggaaaccagacctctgattgacaacctgtcaaaaaaagtggtgattaagaccatcgagaccagagacggacatataattaacgagtccacccaaaacgaggatctggaatgagctgcatgtgaacccgaggcactgaagatccacgctggagtaaattgagaagaatgaagtttcctctgttgtttctgttgagagtaaaagaaaagaaaagaaaaacagctttaaagtgccttctttgcattgccacattagagcggtctgttattagagctgaaggctgaaagtgtaggccactgagtaaaccagctttatcctgggtttatgtttaccacaatgtctgtagtttacactgtcgaagaccacagcaatactgcttcaactttttctgttttgtatgattttcacaaacgaccaaaaacgtgatgagcttgcgtcttctgcaccattagaccaaacaacaaactgacacaaattcaataaaccttttgaaaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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