2024-05-04 21:06:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_131770 809 bp mRNA linear VRT 02-SEP-2023 DEFINITION Danio rerio claudin 1 (cldn1), mRNA. ACCESSION NM_131770 VERSION NM_131770.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 809) AUTHORS Osorio-Mendez D, Miller A, Begeman IJ, Kurth A, Hagle R, Rolph D, Dickson AL, Chen CH, Halloran M, Poss KD and Kang J. TITLE Voltage-gated sodium channel scn8a is required for innervation and regeneration of amputated adult zebrafish fins JOURNAL Proc Natl Acad Sci U S A 119 (28), e2200342119 (2022) PUBMED 35867745 REFERENCE 2 (bases 1 to 809) AUTHORS Piccione M, Facchinello N, Schrenk S, Gasparella M, Pathak S, Ammar RM, Rabini S, Dalla Valle L and Di Liddo R. TITLE STW 5 Herbal Preparation Modulates Wnt3a and Claudin 1 Gene Expression in Zebrafish IBS-like Model JOURNAL Pharmaceuticals (Basel) 14 (12), 1234 (2021) PUBMED 34959635 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 809) AUTHORS Garcia-Concejo A and Larhammar D. TITLE Protein kinase C family evolution in jawed vertebrates JOURNAL Dev Biol 479, 77-90 (2021) PUBMED 34329618 REFERENCE 4 (bases 1 to 809) AUTHORS Hou Y, Lee HJ, Chen Y, Ge J, Osman FOI, McAdow AR, Mokalled MH, Johnson SL, Zhao G and Wang T. TITLE Cellular diversity of the regenerating caudal fin JOURNAL Sci Adv 6 (33), eaba2084 (2020) PUBMED 32851162 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 809) AUTHORS Heng J, Lv P, Zhang Y, Cheng X, Wang L, Ma D and Liu F. TITLE Rab5c-mediated endocytic trafficking regulates hematopoietic stem and progenitor cell development via Notch and AKT signaling JOURNAL PLoS Biol 18 (4), e3000696 (2020) PUBMED 32275659 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 809) AUTHORS Clelland ES and Kelly SP. TITLE Exogenous GDF9 but not Activin A, BMP15 or TGFbeta alters tight junction protein transcript abundance in zebrafish ovarian follicles JOURNAL Gen Comp Endocrinol 171 (2), 211-217 (2011) PUBMED 21291886 REFERENCE 7 (bases 1 to 809) AUTHORS Clelland ES and Kelly SP. TITLE Tight junction proteins in zebrafish ovarian follicles: stage specific mRNA abundance and response to 17beta-estradiol, human chorionic gonadotropin, and maturation inducing hormone JOURNAL Gen Comp Endocrinol 168 (3), 388-400 (2010) PUBMED 20553723 REFERENCE 8 (bases 1 to 809) AUTHORS Xie J, Farage E, Sugimoto M and Anand-Apte B. TITLE A novel transgenic zebrafish model for blood-brain and blood-retinal barrier development JOURNAL BMC Dev Biol 10, 76 (2010) PUBMED 20653957 REMARK Publication Status: Online-Only REFERENCE 9 (bases 1 to 809) AUTHORS Whitehead GG, Makino S, Lien CL and Keating MT. TITLE fgf20 is essential for initiating zebrafish fin regeneration JOURNAL Science 310 (5756), 1957-1960 (2005) PUBMED 16373575 REFERENCE 10 (bases 1 to 809) AUTHORS Loh YH, Christoffels A, Brenner S, Hunziker W and Venkatesh B. TITLE Extensive expansion of the claudin gene family in the teleost fish, Fugu rubripes JOURNAL Genome Res 14 (7), 1248-1257 (2004) PUBMED 15197168 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF359436.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AF359436.1, BC097096.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..809 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /chromosome="2" /map="2" gene 1..809 /gene="cldn1" /gene_synonym="cldn19" /note="claudin 1" /db_xref="GeneID:81590" /db_xref="ZFIN:ZDB-GENE-010328-11" CDS 2..634 /gene="cldn1" /gene_synonym="cldn19" /note="claudin 19" /codon_start=1 /product="claudin-1 precursor" /protein_id="NP_571845.1" /db_xref="GeneID:81590" /db_xref="ZFIN:ZDB-GENE-010328-11" /translation="
MAHAGLQMLGYCLGFLGLLGLIASTAMAEWKMSSYAGDNIITAQAQYEGLWQSCVSQSTGQLQCKKYDSLLKLPGEIQGARGLMLTGIFLCGLSTLVSFVGMKCTTCLSEAPQVKSKVALAGGVLFITGGLFALIATSWYGEKIRQKFFDPFTPTNARYEFGKALYVGWGSSALSIIGGSLLCCICGSEASEKPSYPPARAAGRPGTDRV"
sig_peptide 2..85 /gene="cldn1" /gene_synonym="cldn19" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 71..547 /gene="cldn1" /gene_synonym="cldn19" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
gatggcgcacgcagggctgcagatgctgggttactgtctgggttttctgggtctgctgggtctgatcgcctccacagccatggcggagtggaagatgtcctcgtacgccggggacaacatcatcacagcacaggcgcagtatgagggactgtggcagtcctgtgtgtcgcagagcaccggccagctgcagtgcaaaaaatacgactccctgctgaagctgccaggggagatccagggggctcgagggctgatgctgaccggcatcttcctgtgtggcctgtcgacgctggtgtctttcgtgggcatgaagtgcacaacctgcctttcagaagcgccacaggtgaagagtaaagtggctctggctggaggagtgctgttcatcactggagggctttttgctctgatcgccaccagctggtacggagagaagatccggcagaagttcttcgacccgtttactccaactaacgcgaggtatgagttcgggaaggctctgtatgtgggctggggctcttcagctctctccatcatcggcggttccctgctctgctgtatctgtgggagtgaagcttctgaaaaaccctcgtatcctccagcgcgcgcagcaggacgcccgggaactgaccgcgtctgaacacacacctgactgcaggcaaacctgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaatcttcgcctgttctcctgattaaccctctgcactgatgtaaatgaccggctcatcatgacgcactcattaaagctgaagtgtgtgtgttaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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