LOCUS       NM_131763               1145 bp    mRNA    linear   VRT 17-NOV-2024
DEFINITION  Danio rerio claudin b (cldnb), mRNA.
ACCESSION   NM_131763
VERSION     NM_131763.2
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1145)
  AUTHORS   Chen,F., Kohler,M., Cucun,G., Takamiya,M., Kizil,C., Cosacak,M.I.
            and Rastegar,S.
  TITLE     sox1a:eGFP transgenic line and single-cell transcriptomics reveal
            the origin of zebrafish intraspinal serotonergic neurons
  JOURNAL   iScience 26 (8), 107342 (2023)
   PUBMED   37529101
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1145)
  AUTHORS   Hughes,S.M., Escaleira,R.C., Wanders,K., Koth,J., Wilkinson,D.G.
            and Xu,Q.
  TITLE     Clonal behaviour of myogenic precursor cells throughout the
            vertebrate lifespan
  JOURNAL   Biol Open 11 (8) (2022)
   PUBMED   35972050
REFERENCE   3  (bases 1 to 1145)
  AUTHORS   Lin,M.J., Lee,C.M., Hsu,W.L., Chen,B.C. and Lee,S.J.
  TITLE     Macrophages Break Interneuromast Cell Quiescence by Intervening in
            the Inhibition of Schwann Cells in the Zebrafish Lateral Line
  JOURNAL   Front Cell Dev Biol 10, 907863 (2022)
   PUBMED   35846366
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1145)
  AUTHORS   Marsay,K.S., Greaves,S., Mahabaleshwar,H., Ho,C.M., Roehl,H.,
            Monk,P.N., Carney,T.J. and Partridge,L.J.
  TITLE     Tetraspanin Cd9b and Cxcl12a/Cxcr4b have a synergistic effect on
            the control of collective cell migration
  JOURNAL   PLoS One 16 (11), e0260372 (2021)
   PUBMED   34847198
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1145)
  AUTHORS   Phatak,M., Kulkarni,S., Miles,L.B., Anjum,N., Dworkin,S. and
            Sonawane,M.
  TITLE     Grhl3 promotes retention of epidermal cells under endocytic stress
            to maintain epidermal architecture in zebrafish
  JOURNAL   PLoS Genet 17 (9), e1009823 (2021)
   PUBMED   34570762
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1145)
  AUTHORS   Sarrazin,A.F., Villablanca,E.J., Nunez,V.A., Sandoval,P.C.,
            Ghysen,A. and Allende,M.L.
  TITLE     Proneural gene requirement for hair cell differentiation in the
            zebrafish lateral line
  JOURNAL   Dev Biol 295 (2), 534-545 (2006)
   PUBMED   16678150
REFERENCE   7  (bases 1 to 1145)
  AUTHORS   Haas,P. and Gilmour,D.
  TITLE     Chemokine signaling mediates self-organizing tissue migration in
            the zebrafish lateral line
  JOURNAL   Dev Cell 10 (5), 673-680 (2006)
   PUBMED   16678780
REFERENCE   8  (bases 1 to 1145)
  AUTHORS   Lopez-Schier,H., Starr,C.J., Kappler,J.A., Kollmar,R. and
            Hudspeth,A.J.
  TITLE     Directional cell migration establishes the axes of planar polarity
            in the posterior lateral-line organ of the zebrafish
  JOURNAL   Dev Cell 7 (3), 401-412 (2004)
   PUBMED   15363414
REFERENCE   9  (bases 1 to 1145)
  AUTHORS   Malek,R.L., Sajadi,H., Abraham,J., Grundy,M.A. and Gerhard,G.S.
  TITLE     The effects of temperature reduction on gene expression and
            oxidative stress in skeletal muscle from adult zebrafish
  JOURNAL   Comp Biochem Physiol C Toxicol Pharmacol 138 (3), 363-373 (2004)
   PUBMED   15533794
REFERENCE   10 (bases 1 to 1145)
  AUTHORS   Loh,Y.H., Christoffels,A., Brenner,S., Hunziker,W. and Venkatesh,B.
  TITLE     Extensive expansion of the claudin gene family in the teleost fish,
            Fugu rubripes
  JOURNAL   Genome Res 14 (7), 1248-1257 (2004)
   PUBMED   15197168
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CR847847.6, BC078358.1 and AF359426.1.
            
            On May 1, 2009 this sequence version replaced NM_131763.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-21                CR847847.6         60310-60330         c
            22-837              BC078358.1         1-816
            838-1145            AF359426.1         813-1120
FEATURES             Location/Qualifiers
     source          1..1145
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="21"
                     /map="21"
     gene            1..1145
                     /gene="cldnb"
                     /gene_synonym="cldn30c; wu:fa66b05"
                     /note="claudin b"
                     /db_xref="GeneID:81581"
                     /db_xref="ZFIN:ZDB-GENE-010328-2"
     exon            1..1129
                     /gene="cldnb"
                     /gene_synonym="cldn30c; wu:fa66b05"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..716
                     /gene="cldnb"
                     /gene_synonym="cldn30c; wu:fa66b05"
                     /codon_start=1
                     /product="claudin b"
                     /protein_id="NP_571838.1"
                     /db_xref="GeneID:81581"
                     /db_xref="ZFIN:ZDB-GENE-010328-2"
                     /translation="

MASTGLQMLGIALAIFGWIGVIVLCALPMWKVTAFIGANIVTSQTSWEGIWMSCVVQSTGQMQCKVYDSMLALSSDIQAARALTVISIVIGVMGIMLSMAGGKCTNCIEEESSKAKVGITAGVIFIISGVLCLVPVCWTANAIIQDFYNPLVVQAQKREIGASLYIGWGASALLIIGGSLLCCHCPEKSDSGKYTAKYNATPRSEASAPSGKNFV"

     misc_feature    78..611
                     /gene="cldnb"
                     /gene_synonym="cldn30c; wu:fa66b05"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
ORIGIN      

tcacacacacacgcttgataagactgcgaagagaaccaccaaccaaccaacaaggaaaacgaaaaagcatggcatcaaccggcctacagatgctgggcatcgccctggccatctttgggtggatcggagtcattgtgctctgcgcactccccatgtggaaagtcacagccttcatcggcgccaacattgtcacttcacagacatcctgggaaggaatttggatgagctgcgtggttcaaagcactggacagatgcagtgtaaggtctacgactccatgctggctctctcctcagatattcaagccgctcgagctctcaccgtcatctccatcgtgatcggagtcatgggaatcatgctgtcgatggctggtggaaaatgcaccaactgcatcgaggaggagagctccaaagccaaggttgggatcacggcaggtgtgattttcatcatctctggggtgctatgtctggtcccggtgtgctggacggctaacgctatcatccaggacttctacaacccgctagtggtccaggcacagaagagggagattggagcgtcactgtacatcggctggggtgcctcagctctgttgatcattggtggaagtctgctctgttgccactgccccgaaaaatcagacagcggaaaatacacagctaaatacaacgcaacccctcgctctgaagcctctgcaccctccggaaagaactttgtgtaaatgatcaactcaggaaaatggactctacaatgtttacggtcttagtttgttggacattgaggctcaaaatgagtttgcaggacttgaaaagcagatgctgaatgtttttttttttttttttttttaccaatatatatgcaaaacaaacaaagaaaatggggaaccacgtttgaaacagcctctgcagttaaaggaggttaacctgaaaattatttttgcttaagtttggtcaaatgttcttttgtaccgtggtcattataaaagtgttcacttttgtatgttttcaagtatgattttgtaaatattagcatttttgtacagcctaagtacaggtttttctacaactttgtacaggtttatttcttgatatatgtttaaaggaattaataaataaatacattttgttaatatcaaaaaaaaaaaaaaaaa

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