2024-05-05 00:28:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_131637 1976 bp mRNA linear VRT 05-AUG-2023 DEFINITION Danio rerio claudin 7b (cldn7b), mRNA. ACCESSION NM_131637 VERSION NM_131637.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 1976) AUTHORS Garcia-Concejo A and Larhammar D. TITLE Protein kinase C family evolution in jawed vertebrates JOURNAL Dev Biol 479, 77-90 (2021) PUBMED 34329618 REFERENCE 2 (bases 1 to 1976) AUTHORS Zhang FL, Yang YL, Zhang Z, Yao YY, Xia R, Gao CC, Du DD, Hu J, Ran C, Liu Z and Zhou ZG. TITLE Surface-Displayed Amuc_1100 From Akkermansia muciniphila on Lactococcus lactis ZHY1 Improves Hepatic Steatosis and Intestinal Health in High-Fat-Fed Zebrafish JOURNAL Front Nutr 8, 726108 (2021) PUBMED 34722607 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1976) AUTHORS Phatak M, Kulkarni S, Miles LB, Anjum N, Dworkin S and Sonawane M. TITLE Grhl3 promotes retention of epidermal cells under endocytic stress to maintain epidermal architecture in zebrafish JOURNAL PLoS Genet 17 (9), e1009823 (2021) PUBMED 34570762 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 1976) AUTHORS Solis CJ, Hamilton MK, Caruffo M, Garcia-Lopez JP, Navarrete P, Guillemin K and Feijoo CG. TITLE Intestinal Inflammation Induced by Soybean Meal Ingestion Increases Intestinal Permeability and Neutrophil Turnover Independently of Microbiota in Zebrafish JOURNAL Front Immunol 11, 1330 (2020) PUBMED 32793187 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 1976) AUTHORS Jin M, Wang D, Xu W, Wang H and Cao Y. TITLE Claudin-7b and Claudin-h are required for controlling cilia morphogenesis in the zebrafish kidney JOURNAL Mech Dev 161, 103595 (2020) PUBMED 31887432 REFERENCE 6 (bases 1 to 1976) AUTHORS Gallardo VE, Liang J, Behra M, Elkahloun A, Villablanca EJ, Russo V, Allende ML and Burgess SM. TITLE Molecular dissection of the migrating posterior lateral line primordium during early development in zebrafish JOURNAL BMC Dev Biol 10, 120 (2010) PUBMED 21144052 REMARK Publication Status: Online-Only REFERENCE 7 (bases 1 to 1976) AUTHORS Clelland ES and Kelly SP. TITLE Tight junction proteins in zebrafish ovarian follicles: stage specific mRNA abundance and response to 17beta-estradiol, human chorionic gonadotropin, and maturation inducing hormone JOURNAL Gen Comp Endocrinol 168 (3), 388-400 (2010) PUBMED 20553723 REFERENCE 8 (bases 1 to 1976) AUTHORS Davey C, Tallafuss A and Washbourne P. TITLE Differential expression of neuroligin genes in the nervous system of zebrafish JOURNAL Dev Dyn 239 (2), 703-714 (2010) PUBMED 20063411 REFERENCE 9 (bases 1 to 1976) AUTHORS Reischauer S, Levesque MP, Nusslein-Volhard C and Sonawane M. TITLE Lgl2 executes its function as a tumor suppressor by regulating ErbB signaling in the zebrafish epidermis JOURNAL PLoS Genet 5 (11), e1000720 (2009) PUBMED 19911055 REFERENCE 10 (bases 1 to 1976) AUTHORS Loh YH, Christoffels A, Brenner S, Hunziker W and Venkatesh B. TITLE Extensive expansion of the claudin gene family in the teleost fish, Fugu rubripes JOURNAL Genome Res 14 (7), 1248-1257 (2004) PUBMED 15197168 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BX005027.13. On Jul 27, 2023 this sequence version replaced NM_131637.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC066408.1, GDQH01004522.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168448, SAMEA4476729 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-403 BX005027.13 51719-52121 404-568 BX005027.13 54059-54223 569-653 BX005027.13 54487-54571 654-1976 BX005027.13 55957-57279 FEATURES Location/Qualifiers source 1..1976 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="10" /map="10" gene 1..1976 /gene="cldn7b" /gene_synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /note="claudin 7b" /db_xref="GeneID:60635" /db_xref="ZFIN:ZDB-GENE-001103-5" exon 1..403 /gene="cldn7b" /gene_synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /inference="alignment:Splign:2.1.0" misc_feature 163..165 /gene="cldn7b" /gene_synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /note="upstream in-frame stop codon" CDS 181..828 /gene="cldn7b" /gene_synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /note="claudin-like protein ZF4A22; claudin-7" /codon_start=1 /product="claudin-7-B" /protein_id="NP_571712.1" /db_xref="GeneID:60635" /db_xref="ZFIN:ZDB-GENE-001103-5" /translation="
MAHKGLQLLGFTLSLLGLIGLIIGTIMPQWKMSAYVGDNIITAIAMYQGLWMSCAYQSTGQQQCKVYDSVLQLDSALQATRALMVVAILLTVAGLGVASMGMKCTNCGGDDKVKKSRIAMTGGIILSVGALCSIVACGWFTSQIIRDFYNPFTPVNTKYEFGAAIFIAWAGAFLDIMGGGMLASSCSKGQSSPNYPKSSRPVKSSRPPSSSKEYV"
misc_feature 190..726 /gene="cldn7b" /gene_synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; pfam00822" /db_xref="CDD:395662" misc_feature 202..264 /gene="cldn7b" /gene_synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /note="propagated from UniProtKB/Swiss-Prot (Q9YH92.1); transmembrane region" misc_feature 424..486 /gene="cldn7b" /gene_synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /note="propagated from UniProtKB/Swiss-Prot (Q9YH92.1); transmembrane region" misc_feature 532..594 /gene="cldn7b" /gene_synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /note="propagated from UniProtKB/Swiss-Prot (Q9YH92.1); transmembrane region" misc_feature 667..729 /gene="cldn7b" /gene_synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /note="propagated from UniProtKB/Swiss-Prot (Q9YH92.1); transmembrane region" misc_feature 736..825 /gene="cldn7b" /gene_synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /note="propagated from UniProtKB/Swiss-Prot (Q9YH92.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 404..568 /gene="cldn7b" /gene_synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /inference="alignment:Splign:2.1.0" exon 569..653 /gene="cldn7b" /gene_synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /inference="alignment:Splign:2.1.0" exon 654..1976 /gene="cldn7b" /gene_synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /inference="alignment:Splign:2.1.0" ORIGIN
tgcggcttcggtgaacaggtgtttgagtcagggcttctccgatttttatttacattttaaacgtattttttttattattttgaccgattcataatcggaaggctgctgaaagcgagcgatatttggacactattaggttatttgctaagcaggtttagtttttaaactcattctgagaagatggcacataaaggactgcaactcctagggtttactctatcgttgctagggttgattgggctcattattggcacaatcatgccccagtggaagatgtctgcttacgttggagataatataatcacagctattgcgatgtaccagggcctttggatgtcgtgcgcttaccagagcaccggccaacagcaatgcaaggtgtatgactccgtcctacaactcgacagtgctctccaggcaactcgtgcccttatggttgtagcaattcttcttacagtagctggactgggtgtggccagcatgggcatgaagtgtactaactgtggtggtgatgacaaggtcaaaaagtcccgcattgccatgacaggcggtataatcctctctgttggagccctctgtagcattgttgcctgtggctggtttacaagtcaaattatcagggatttctacaaccccttcacacctgtcaatacaaagtatgaatttggtgcagctattttcatcgcctgggctggtgcatttctcgatataatgggtggaggcatgttggcctcttcttgctcaaagggtcagtcatctcctaattaccctaagtcctccagacccgtcaagtcctccagaccacccagcagcagcaaggaatatgtttgagccatttgttcacgacctggaaaggacatgatcaatcccagagtatgggtagaagtttgccctgtcagctgatatgagatctgtttaatttggtttgtatgtttgactatagatagaaaaaacagctcagaaaggtatttttggccaacttttacttgtgttctgatacagcagcccaccaaaaatggtcacttctttcttttggttagctccttgttccaccttccccacccccgattataaaatgtgagtttgcaaaggggcttcttccccagagtcttcctcatttcagattactgtcacctttagtgaacatgaaagagggagacctgctcagggaaaaatcattactcatactgctctgttacaccaaatctctgcttccagctgttaaacccttgcttgcatcattttaggaactgcgccagacactgaggtgcttatgaacaattaatacatgcattacatttttaaagctaagagtaacatgcaaataacctggttcactttgcagcattttccctgtctggtccccatgccagcagaaactcttttcatacttcattttatacaaattagcaccctttaagtaaagtttcactcgtaaattcaatgaatcattcttttcagtgtatgctgatgaagctggattaaaactttagatggaaaaatgaagattaatttggtttggatgaggcttaacatgaagcactaaaatcaaattgctctttcttatgcaacttgaaccttttgatttgctgttgtcctttgttttgagtgtacaccttggtttttgtgcccatttaggaaggtaacatgttttttgtttttatacactccattaattggtcacaaaaaagctgtgaatattggcttagttgaatcactgctggttccaactatttttatgttactgtaaaacttttttttatccataatatgaacatttaaaactggactatacttttttttttttattttgctttggtctgtgcttgaaccatttgatgtgggttgcactcaagtctacttaggatagagtcacgtgaatgtctgtgactagcttatgcaaatatttaactttttaaaatgtttttgacttcaagtttgcaattgaaaaattttatgtaaataaattttttaaacag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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