2024-11-01 08:08:25, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_001327816 1585 bp mRNA linear VRT 15-MAR-2021 DEFINITION Danio rerio ring finger protein 122 (rnf122), mRNA. ACCESSION NM_001327816 XM_002663249 VERSION NM_001327816.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 1585) AUTHORS Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and Bobe J. TITLE Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database JOURNAL BMC Genomics 17, 368 (2016) PUBMED 27189481 REMARK Publication Status: Online-Only COMMENT INFERRED REFSEQ: This record is predicted by genome sequence analysis and is not yet supported by experimental evidence. The reference sequence was derived from FO704661.2 and CU855950.8. On May 26, 2016 this sequence version replaced XM_002663249.4. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: GFIL01016539.1, EH594469.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-362 FO704661.2 10474-10835 c 363-519 CU855950.8 3070-3226 520-565 CU855950.8 3962-4007 566-607 CU855950.8 4135-4176 608-690 CU855950.8 6507-6589 691-1585 CU855950.8 9153-10047 FEATURES Location/Qualifiers source 1..1585 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="8" /map="8" gene 1..1585 /gene="rnf122" /gene_synonym="si:ch1073-392o20.1" /note="ring finger protein 122" /db_xref="GeneID:100329730" /db_xref="ZFIN:ZDB-GENE-091204-454" exon 1..362 /gene="rnf122" /gene_synonym="si:ch1073-392o20.1" /inference="alignment:Splign:2.1.0" misc_feature 293..295 /gene="rnf122" /gene_synonym="si:ch1073-392o20.1" /note="upstream in-frame stop codon" CDS 338..805 /gene="rnf122" /gene_synonym="si:ch1073-392o20.1" /codon_start=1 /product="RING finger protein 122" /protein_id="NP_001314745.1" /db_xref="GeneID:100329730" /db_xref="ZFIN:ZDB-GENE-091204-454" /translation="
MHPFQWCNGCFCGLGLIYSNKTCTMPSVTFQDLPLNIYMVIFGTGIFVFVLSLIFCCYFISKLRHQAQSERFGYREVVLKGDPKKLNLHGQTCAVCLEDFKVKDELGVLPCQHAFHRRCVVKWLEVRCVCPMCNKPLSGSSEQHQSLGTLLDELV"
misc_feature 608..748 /gene="rnf122" /gene_synonym="si:ch1073-392o20.1" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order(614..616,623..625,668..670,674..676,683..685, 692..694,725..727,734..736) /gene="rnf122" /gene_synonym="si:ch1073-392o20.1" /note="cross-brace motif; other site" /db_xref="CDD:438338" exon 363..519 /gene="rnf122" /gene_synonym="si:ch1073-392o20.1" /inference="alignment:Splign:2.1.0" exon 520..565 /gene="rnf122" /gene_synonym="si:ch1073-392o20.1" /inference="alignment:Splign:2.1.0" exon 566..607 /gene="rnf122" /gene_synonym="si:ch1073-392o20.1" /inference="alignment:Splign:2.1.0" exon 608..690 /gene="rnf122" /gene_synonym="si:ch1073-392o20.1" /inference="alignment:Splign:2.1.0" exon 691..1585 /gene="rnf122" /gene_synonym="si:ch1073-392o20.1" /inference="alignment:Splign:2.1.0" ORIGIN
ctcttgtttagttctcaatggatgccaacatcagccacgacacgagatccgatcacatactgtaaatatatatagaaataaaatcagatgcgagacgaagcgcgttttcttagcgtcggatataacgttaaaagcgcgcgctcgccagaagtaatgtcgtgtgtttaataatgtgttggtctgactggactgaaatgaccataaagacgaagtgattgtgttttgggtgaatccagatgtgatgtatggcctgacagagagacagacaggcggagggcatcgtctctgtttataaacacacggatcttcatataggaatcagatatatgggggattaatgcaccctttccagtggtgcaacgggtgcttctgcggtttgggactaatctactccaataagacctgcactatgccctccgtcaccttccaggaccttcctctcaacatctacatggtcatcttcggcacaggcatcttcgtcttcgtcctcagcctcatcttctgctgctacttcataagtaaattgagacatcaggctcaaagtgaacgctttggataccgagaggtggttttaaaaggggatccaaagaagctgaatctacatgggcagacgtgtgcagtgtgtctggaggactttaaggtgaaagatgagctgggagtgttgccatgccaacatgcctttcacaggaggtgtgtggtgaagtggctggaggtgcgctgtgtgtgtccaatgtgtaacaaacctctgtctggatcctccgagcagcaccagagcctcgggactctgctggatgagctggtgtagagcgcagactagcattagcatcaaaaaaaacaaaaaaactcacaaacgcctctgacctgactgtgatttcacccgaatctgagactgatgaacgccagggccacgtcttattcatgacgaaccaactgaggaagcatttaggatgaggttttgtgtcttttcagactgtaattaagcactgaatgctaacagagctgtctgtttgtatgctaactcagaaggctaactcaccacaggttccctcaggaatacatacagggttttttggataagtggttttcgattttatcggttaaataaggtctgtgtttaacaatttttcaagttttgaagaactcaaaaacaacacttgggtgctaaccttaaccctaactgcttaagttatacgttgctagcaagttctcacgtttaaagtaggctacatatgtaaagtggatactaaagttgttttgggaccatactatagtaaagtgtatgatactgtatgtattatattgtttacaacccttctacaatagtgaactgataaacggtaataaatactgtagttcactttcgttttttactatagttaactgtggtttgtcgtagtataatgtacaatagagttgttaaaaagctgcagtgttgagttatttgtttatgttgttatggtatggagccagatcagtctcaaaaataatacgtttgcaaaagaaaaactcatacatgcaccgcacaattcacatttacagaattcaattcgtaaattcaaaacacaatttgtgaattcacggtttg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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