LOCUS       NM_001327816            1585 bp    mRNA    linear   VRT 15-MAR-2021
DEFINITION  Danio rerio ring finger protein 122 (rnf122), mRNA.
ACCESSION   NM_001327816 XM_002663249
VERSION     NM_001327816.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from FO704661.2 and CU855950.8.
            
            On May 26, 2016 this sequence version replaced XM_002663249.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: GFIL01016539.1, EH594469.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2168446, SAMEA2168447
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-362               FO704661.2         10474-10835         c
            363-519             CU855950.8         3070-3226
            520-565             CU855950.8         3962-4007
            566-607             CU855950.8         4135-4176
            608-690             CU855950.8         6507-6589
            691-1585            CU855950.8         9153-10047
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="8"
                     /map="8"
     gene            1..1585
                     /gene="rnf122"
                     /gene_synonym="si:ch1073-392o20.1"
                     /note="ring finger protein 122"
                     /db_xref="GeneID:100329730"
                     /db_xref="ZFIN:ZDB-GENE-091204-454"
     exon            1..362
                     /gene="rnf122"
                     /gene_synonym="si:ch1073-392o20.1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    293..295
                     /gene="rnf122"
                     /gene_synonym="si:ch1073-392o20.1"
                     /note="upstream in-frame stop codon"
     CDS             338..805
                     /gene="rnf122"
                     /gene_synonym="si:ch1073-392o20.1"
                     /codon_start=1
                     /product="RING finger protein 122"
                     /protein_id="NP_001314745.1"
                     /db_xref="GeneID:100329730"
                     /db_xref="ZFIN:ZDB-GENE-091204-454"
                     /translation="

MHPFQWCNGCFCGLGLIYSNKTCTMPSVTFQDLPLNIYMVIFGTGIFVFVLSLIFCCYFISKLRHQAQSERFGYREVVLKGDPKKLNLHGQTCAVCLEDFKVKDELGVLPCQHAFHRRCVVKWLEVRCVCPMCNKPLSGSSEQHQSLGTLLDELV"

     misc_feature    608..748
                     /gene="rnf122"
                     /gene_synonym="si:ch1073-392o20.1"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; Region: RING_Ubox; cl17238"
                     /db_xref="CDD:473075"
     misc_feature    order(614..616,623..625,668..670,674..676,683..685,
                     692..694,725..727,734..736)
                     /gene="rnf122"
                     /gene_synonym="si:ch1073-392o20.1"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:438338"
     exon            363..519
                     /gene="rnf122"
                     /gene_synonym="si:ch1073-392o20.1"
                     /inference="alignment:Splign:2.1.0"
     exon            520..565
                     /gene="rnf122"
                     /gene_synonym="si:ch1073-392o20.1"
                     /inference="alignment:Splign:2.1.0"
     exon            566..607
                     /gene="rnf122"
                     /gene_synonym="si:ch1073-392o20.1"
                     /inference="alignment:Splign:2.1.0"
     exon            608..690
                     /gene="rnf122"
                     /gene_synonym="si:ch1073-392o20.1"
                     /inference="alignment:Splign:2.1.0"
     exon            691..1585
                     /gene="rnf122"
                     /gene_synonym="si:ch1073-392o20.1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ctcttgtttagttctcaatggatgccaacatcagccacgacacgagatccgatcacatactgtaaatatatatagaaataaaatcagatgcgagacgaagcgcgttttcttagcgtcggatataacgttaaaagcgcgcgctcgccagaagtaatgtcgtgtgtttaataatgtgttggtctgactggactgaaatgaccataaagacgaagtgattgtgttttgggtgaatccagatgtgatgtatggcctgacagagagacagacaggcggagggcatcgtctctgtttataaacacacggatcttcatataggaatcagatatatgggggattaatgcaccctttccagtggtgcaacgggtgcttctgcggtttgggactaatctactccaataagacctgcactatgccctccgtcaccttccaggaccttcctctcaacatctacatggtcatcttcggcacaggcatcttcgtcttcgtcctcagcctcatcttctgctgctacttcataagtaaattgagacatcaggctcaaagtgaacgctttggataccgagaggtggttttaaaaggggatccaaagaagctgaatctacatgggcagacgtgtgcagtgtgtctggaggactttaaggtgaaagatgagctgggagtgttgccatgccaacatgcctttcacaggaggtgtgtggtgaagtggctggaggtgcgctgtgtgtgtccaatgtgtaacaaacctctgtctggatcctccgagcagcaccagagcctcgggactctgctggatgagctggtgtagagcgcagactagcattagcatcaaaaaaaacaaaaaaactcacaaacgcctctgacctgactgtgatttcacccgaatctgagactgatgaacgccagggccacgtcttattcatgacgaaccaactgaggaagcatttaggatgaggttttgtgtcttttcagactgtaattaagcactgaatgctaacagagctgtctgtttgtatgctaactcagaaggctaactcaccacaggttccctcaggaatacatacagggttttttggataagtggttttcgattttatcggttaaataaggtctgtgtttaacaatttttcaagttttgaagaactcaaaaacaacacttgggtgctaaccttaaccctaactgcttaagttatacgttgctagcaagttctcacgtttaaagtaggctacatatgtaaagtggatactaaagttgttttgggaccatactatagtaaagtgtatgatactgtatgtattatattgtttacaacccttctacaatagtgaactgataaacggtaataaatactgtagttcactttcgttttttactatagttaactgtggtttgtcgtagtataatgtacaatagagttgttaaaaagctgcagtgttgagttatttgtttatgttgttatggtatggagccagatcagtctcaaaaataatacgtttgcaaaagaaaaactcatacatgcaccgcacaattcacatttacagaattcaattcgtaaattcaaaacacaatttgtgaattcacggtttg

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