LOCUS       NM_001204271             992 bp    mRNA    linear   VRT 19-JUL-2023
DEFINITION  Danio rerio claudin 10-like 2 (cldn10l2), mRNA.
ACCESSION   NM_001204271 XM_005167397
VERSION     NM_001204271.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 992)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 992)
  AUTHORS   Baltzegar DA, Reading BJ, Brune ES and Borski RJ.
  TITLE     Phylogenetic revision of the claudin gene family
  JOURNAL   Mar Genomics 11, 17-26 (2013)
   PUBMED   23726886
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CABZ01067560.1.
            
            On Jul 11, 2023 this sequence version replaced XM_005167397.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC093313.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA2168446, SAMEA2168447
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-404               CABZ01067560.1     3609-4012           c
            405-566             CABZ01067560.1     1804-1965           c
            567-654             CABZ01067560.1     1559-1646           c
            655-750             CABZ01067560.1     960-1055            c
            751-992             CABZ01067560.1     637-878             c
FEATURES             Location/Qualifiers
     source          1..992
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="9"
                     /map="9"
     gene            1..992
                     /gene="cldn10l2"
                     /gene_synonym="cdn10c; fj92c04; wu:fj92c04"
                     /note="claudin 10-like 2"
                     /db_xref="GeneID:553386"
                     /db_xref="ZFIN:ZDB-GENE-030131-9598"
     exon            1..404
                     /gene="cldn10l2"
                     /gene_synonym="cdn10c; fj92c04; wu:fj92c04"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    143..145
                     /gene="cldn10l2"
                     /gene_synonym="cdn10c; fj92c04; wu:fj92c04"
                     /note="upstream in-frame stop codon"
     CDS             173..931
                     /gene="cldn10l2"
                     /gene_synonym="cdn10c; fj92c04; wu:fj92c04"
                     /codon_start=1
                     /product="claudin 10-like 2"
                     /protein_id="NP_001191200.1"
                     /db_xref="GeneID:553386"
                     /db_xref="ZFIN:ZDB-GENE-030131-9598"
                     /translation="

MRKRLIQVLGFLISTFGWLFVSCTLAMDYWRILYVGGKGGNWMVKASWYWSNLWKDCVTDMSSISDCRDYDALWAVTPYVQAVRGLLMIAMGLGFIAAILCFIGMECTYIGGSEKNKRRVLLAGAALHFAGGLSAAAAYCLYTNRVARAAFAPAVDTTIIRYGIGAPVFFGLVGSFLIILGSALYAVTHISTRKKTVSVGRTLYTRPSYGRRTASKTAYTSAYSAPSRQSSSRLSRMSQATDEKLPARDTFV"

     misc_feature    182..727
                     /gene="cldn10l2"
                     /gene_synonym="cdn10c; fj92c04; wu:fj92c04"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
     exon            405..566
                     /gene="cldn10l2"
                     /gene_synonym="cdn10c; fj92c04; wu:fj92c04"
                     /inference="alignment:Splign:2.1.0"
     exon            567..654
                     /gene="cldn10l2"
                     /gene_synonym="cdn10c; fj92c04; wu:fj92c04"
                     /inference="alignment:Splign:2.1.0"
     exon            655..750
                     /gene="cldn10l2"
                     /gene_synonym="cdn10c; fj92c04; wu:fj92c04"
                     /inference="alignment:Splign:2.1.0"
     exon            751..992
                     /gene="cldn10l2"
                     /gene_synonym="cdn10c; fj92c04; wu:fj92c04"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggaaatgtgtgttttagttattctttcagattctctccgtgtccgagaaacacttgagaatgtttacagtaaagcagcgtcacggtgtgtgtgtgtgtgcaatcacaacacacgctttcctggtgtgtgtatcaaactctgctgaagatatcagtgtgctgctgcgagagacatgaggaagaggctgatccaggtgttggggttcctgatctccaccttcggctggctcttcgtcagctgtactctggccatggactactggaggatcctctatgtgggagggaaaggtggaaactggatggtgaaggcgtcctggtactggtccaacctgtggaaggactgtgtgacggacatgtcctccatctccgactgcagagactatgatgcgctgtgggccgtcacaccgtatgttcaggctgtgcgcggtctgctgatgatcgctatgggtctgggcttcatcgccgctatcctctgcttcatcgggatggagtgcacctacatcggtggaagtgagaagaacaagcgcagagttttactagccggagcagctttgcattttgccggtggtctgtcagcggctgcagcatattgtttatacaccaacagggtggccagagctgcctttgctcccgctgttgacacaactattataaggtatggcataggagcgccggtattctttggactagttggaagtttcctcataattctcggctctgctttatacgcggtgacacacatctccacacgaaagaagaccgtatctgtgggcaggaccctctacactcgtccatcatacggccggcggacggccagtaaaacagcctacacttctgcatactcggctccgtcccgacagtccagctctcgcctgtccagaatgtcacaggccacagatgagaaactgccggcccgagacacgtttgtgtgagcagacccagtaaaggaaaactctgcttcatttcaaagctcaataaaggatgtttaataaa

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