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2024-11-01 08:01:18, GGRNA.v2 : RefSeq release 226 (Sep, 2024)

LOCUS       NM_001161453            9596 bp    mRNA    linear   VRT 03-APR-2024
DEFINITION  Danio rerio dicer 1, ribonuclease type III (dicer1), mRNA.
ACCESSION   NM_001161453 XM_678382
VERSION     NM_001161453.2
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 9596)
  AUTHORS   Yu,W.X., Li,Y.K., Xu,M.F., Xu,C.J., Chen,J., Wei,Y.L. and She,Z.Y.
  TITLE     Kinesin-5 Eg5 is essential for spindle assembly, chromosome
            stability and organogenesis in development
  JOURNAL   Cell Death Discov 8 (1), 490 (2022)
   PUBMED   36513626
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9596)
  AUTHORS   Brown,W., Bardhan,A., Darrah,K., Tsang,M. and Deiters,A.
  TITLE     Optical Control of MicroRNA Function in Zebrafish Embryos
  JOURNAL   J Am Chem Soc 144 (37), 16819-16826 (2022)
   PUBMED   36073798
REFERENCE   3  (bases 1 to 9596)
  AUTHORS   Zhang,X., Yang,F., Liu,F., Tian,Q., Hu,M., Li,P. and Zeng,Y.
  TITLE     Conservation of Differential Animal MicroRNA Processing by Drosha
            and Dicer
  JOURNAL   Front Mol Biosci 8, 730006 (2022)
   PUBMED   35047552
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 9596)
  AUTHORS   Maerker,M., Getwan,M., Dowdle,M.E., McSheene,J.C., Gonzalez,V.,
            Pelliccia,J.L., Hamilton,D.S., Yartseva,V., Vejnar,C., Tingler,M.,
            Minegishi,K., Vick,P., Giraldez,A.J., Hamada,H., Burdine,R.D.,
            Sheets,M.D., Blum,M. and Schweickert,A.
  TITLE     Bicc1 and Dicer regulate left-right patterning through
            post-transcriptional control of the Nodal inhibitor Dand5
  JOURNAL   Nat Commun 12 (1), 5482 (2021)
   PUBMED   34531379
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 9596)
  AUTHORS   Kontur,C., Jeong,M., Cifuentes,D. and Giraldez,A.J.
  TITLE     Ythdf m6A Readers Function Redundantly during Zebrafish Development
  JOURNAL   Cell Rep 33 (13), 108598 (2020)
   PUBMED   33378672
REFERENCE   6  (bases 1 to 9596)
  AUTHORS   Thatcher,E.J., Paydar,I., Anderson,K.K. and Patton,J.G.
  TITLE     Regulation of zebrafish fin regeneration by microRNAs
  JOURNAL   Proc Natl Acad Sci U S A 105 (47), 18384-18389 (2008)
   PUBMED   19015519
REFERENCE   7  (bases 1 to 9596)
  AUTHORS   Giraldez,A.J., Mishima,Y., Rihel,J., Grocock,R.J., Van Dongen,S.,
            Inoue,K., Enright,A.J. and Schier,A.F.
  TITLE     Zebrafish MiR-430 promotes deadenylation and clearance of maternal
            mRNAs
  JOURNAL   Science 312 (5770), 75-79 (2006)
   PUBMED   16484454
REFERENCE   8  (bases 1 to 9596)
  AUTHORS   Miska,E.A.
  TITLE     How microRNAs control cell division, differentiation and death
  JOURNAL   Curr Opin Genet Dev 15 (5), 563-568 (2005)
   PUBMED   16099643
  REMARK    Review article
REFERENCE   9  (bases 1 to 9596)
  AUTHORS   Giraldez,A.J., Cinalli,R.M., Glasner,M.E., Enright,A.J.,
            Thomson,J.M., Baskerville,S., Hammond,S.M., Bartel,D.P. and
            Schier,A.F.
  TITLE     MicroRNAs regulate brain morphogenesis in zebrafish
  JOURNAL   Science 308 (5723), 833-838 (2005)
   PUBMED   15774722
REFERENCE   10 (bases 1 to 9596)
  AUTHORS   Wienholds,E., Koudijs,M.J., van Eeden,F.J., Cuppen,E. and
            Plasterk,R.H.
  TITLE     The microRNA-producing enzyme Dicer1 is essential for zebrafish
            development
  JOURNAL   Nat Genet 35 (3), 217-218 (2003)
   PUBMED   14528306
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL772219.7.
            
            On Oct 26, 2010 this sequence version replaced NM_001161453.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            CDS exon combination :: GDQH01002492.1 [ECO:0000331]
            RNAseq introns       :: mixed/partial sample support SAMEA2168446,
                                    SAMEA2168447 [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-108               AL772219.7         113473-113580       c
            109-297             AL772219.7         113113-113301       c
            298-451             AL772219.7         110477-110630       c
            452-579             AL772219.7         110244-110371       c
            580-714             AL772219.7         109992-110126       c
            715-875             AL772219.7         105466-105626       c
            876-1044            AL772219.7         105148-105316       c
            1045-1517           AL772219.7         104581-105053       c
            1518-1650           AL772219.7         102825-102957       c
            1651-1893           AL772219.7         102225-102467       c
            1894-2048           AL772219.7         101985-102139       c
            2049-2181           AL772219.7         101778-101910       c
            2182-2257           AL772219.7         99471-99546         c
            2258-2397           AL772219.7         99251-99390         c
            2398-2577           AL772219.7         98872-99051         c
            2578-2791           AL772219.7         96127-96340         c
            2792-2945           AL772219.7         94387-94540         c
            2946-3128           AL772219.7         94084-94266         c
            3129-3234           AL772219.7         93881-93986         c
            3235-3410           AL772219.7         93529-93704         c
            3411-4179           AL772219.7         90130-90898         c
            4180-4332           AL772219.7         86834-86986         c
            4333-5107           AL772219.7         81281-82055         c
            5108-5376           AL772219.7         79514-79782         c
            5377-5539           AL772219.7         76715-76877         c
            5540-5615           AL772219.7         76459-76534         c
            5616-9596           AL772219.7         70216-74196         c
FEATURES             Location/Qualifiers
     source          1..9596
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="17"
                     /map="17"
     gene            1..9596
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="dicer 1, ribonuclease type III"
                     /db_xref="GeneID:324724"
                     /db_xref="ZFIN:ZDB-GENE-030131-3445"
     exon            1..108
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            109..297
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    139..141
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="upstream in-frame stop codon"
     CDS             184..5781
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /EC_number="3.1.26.3"
                     /note="dsRNA-specific ribonuclease; Dicer1, Dcr-1 homolog"
                     /codon_start=1
                     /product="endoribonuclease Dicer"
                     /protein_id="NP_001154925.1"
                     /db_xref="GeneID:324724"
                     /db_xref="ZFIN:ZDB-GENE-030131-3445"
                     /translation="
MAGLQLVTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGKTFIAVLLIKELSHQIRGENGKRTVFLVNAASSVAQQASTVRTHSDLQVGDYMSEDMTSWPEEMWNREMIENQVLVMTCHIFLHVLKNGVLPLSKINLLVFDECHLAITGHPYREIMKICEGCPSCPRILGLTASILNGKCDPCDLEEKIQNLEKILQSNAETATDLVVLDRYASQPREEVLDCGQYQDQSGLSERLLNELDEALNFLNDCNLSVHREDRDPTFISKQVLNDCRAVLTVLGPWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKIHALCEEHFSPASLDLKFVTPKVIRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEAEAKEKTEANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIMLADSERTKTFQEDLKTYKAIEKILRNKCSKSAECNDFELEPVTDDDNVLPPYVLRSEDGGPRVTMNTAIGHVNRYCARLPSDPFTHLAPKCKTVEMNTGGYRSTLFLPINSPLRVPVTGPVMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCSPKAIPECLRGCYPVPEQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFSLSAEQLELITRLHQYIFSHILRLEKPALEFKPVEADSAYCVLPLNIVEDSNTLDLDFKFMEDIEKSEARIGIPNTQYTKQNPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLSNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQTAIDAGVGAQTLPPDFRYPNLDFGWKKSIDSKSFISCPSACMEEDDDHCKLGTSSDSNHTAPESCSMEVSQPPEGAPNTPDEKLETLTLPVTDLNKDCFPNLPNGTQADSDDLPHRSDVCQCSQLGPLERDLSTQTTTSVSVRPSPAGEPQPWPSDECTGRSSDLCDPHVKKPTSKHCPKSETATSTPAPSETSSEDCRSACAGPAWDSPKTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSSTDKWDSDENKDLANGKASDDEDEDDDDEPEEAEVEPSKEDVNVEDDLEYYYEHIRFIDSMLIGSGAFGKKISLQPTDPGYEWKAPKKAHNSHFSPDGGADEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEENCGTDIGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPPEKQSSGGSAELQYGWLKIPPRCMFEHPDAERTLNHLISGFLNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVQNN"
     misc_feature    277..858
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="DEXH-box helicase domain of endoribonuclease Dicer;
                     Region: DEXHc_dicer; cd18034"
                     /db_xref="CDD:350792"
     misc_feature    order(277..288,295..297,346..369,481..483,667..669,
                     760..762)
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350792"
     misc_feature    order(445..450,517..522,592..594,598..603,610..612,
                     685..693)
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="nucleic acid binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:350792"
     misc_feature    664..675
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6TV19.2);
                     Region: DECH box"
     misc_feature    952..1236
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="Partner-binding domain of the endoribonuclease
                     Dicer; Region: Dicer_PBD; cd15903"
                     /db_xref="CDD:277191"
     misc_feature    order(967..972,979..981,985..990,1165..1170,1177..1182,
                     1189..1191,1198..1203,1210..1212)
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="Trbp binding interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:277191"
     misc_feature    1255..1833
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="C-terminal helicase domain of the endoribonuclease
                     Dicer; Region: SF2_C_dicer; cd18802"
                     /db_xref="CDD:350189"
     misc_feature    1372..1434
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6TV19.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    order(1486..1494,1702..1704,1759..1761,1765..1767)
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:350189"
     misc_feature    order(1714..1716,1720..1722,1795..1797,1801..1803)
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350189"
     misc_feature    2029..2295
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="Dicer dimerization domain; Region: Dicer_dimer;
                     pfam03368"
                     /db_xref="CDD:460900"
     misc_feature    2320..2379
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6TV19.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    2797..3165
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse
                     involved in cleaving dsRNA in the RNA interference
                     pathway. It generates dsRNAs which are approximately 20 bp
                     long (siRNAs), which in turn target hydrolysis of
                     homologous RNAs. PAZ domains are named...; Region:
                     PAZ_dicer_like; cd02843"
                     /db_xref="CDD:239209"
     misc_feature    order(2986..2988,3025..3027,3043..3045,3055..3057,
                     3109..3111,3133..3135,3139..3141)
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239209"
     misc_feature    3514..3609
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6TV19.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    3751..3960
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6TV19.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    4015..>4290
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="Ribonuclease III family; Region: RIBOc; smart00535"
                     /db_xref="CDD:197778"
     misc_feature    order(4066..4071,4078..4083,4090..4092,4099..4104,
                     4111..4116,4120..4128,4156..4158)
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238333"
     misc_feature    4300..4434
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6TV19.2);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    5056..5550
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="Ribonuclease III C terminal domain. This group
                     consists of eukaryotic, bacterial and archeal ribonuclease
                     III (RNAse III) proteins. RNAse III is a double stranded
                     RNA-specific endonuclease. Prokaryotic RNAse III is
                     important in post-transcriptional...; Region: RIBOc;
                     cd00593"
                     /db_xref="CDD:238333"
     misc_feature    order(5116..5121,5128..5133,5140..5142,5149..5154,
                     5161..5166,5170..5178,5206..5208,5470..5472,5503..5505)
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238333"
     misc_feature    order(5116..5118,5125..5127,5137..5139,5440..5442,
                     5449..5451)
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="active site"
                     /db_xref="CDD:238333"
     misc_feature    order(5125..5127,5440..5442,5449..5451)
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:238333"
     misc_feature    5428..5430
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="Important for activity. /evidence=ECO:0000250;
                     propagated from UniProtKB/Swiss-Prot (Q6TV19.2); other
                     site"
     misc_feature    5563..5751
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="double-stranded RNA binding motif of
                     endoribonuclease Dicer and similar proteins; Region:
                     DSRM_DICER; cd10843"
                     /db_xref="CDD:380680"
     misc_feature    order(5563..5568,5572..5577,5584..5589,5596..5601,
                     5611..5613,5626..5634,5638..5640,5644..5646,5695..5706,
                     5713..5715)
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:380680"
     exon            298..451
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            452..579
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            580..714
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            715..875
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            876..1044
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            1045..1517
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            1518..1650
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            1651..1893
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            1894..2048
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            2049..2181
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            2182..2257
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            2258..2397
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            2398..2577
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            2578..2791
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            2792..2945
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            2946..3128
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            3129..3234
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            3235..3410
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            3411..4179
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            4180..4332
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            4333..5107
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            5108..5376
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            5377..5539
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            5540..5615
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
     exon            5616..9596
                     /gene="dicer1"
                     /gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
cagagtaactcaaggggagaaaagaatgagctgattttaagagctcagataatgatgcccagaataagtgcggcctggtcacagagcaaagtggggaacgcacacgcttgagcattagatggccatgatgcaatgagataaacactggatgactggaggtctcctgcttatcagtctctaagcatggctggcctacagctggtgacccctgcctcctcacccatggggcccttctttggtctcccgtggcaacaggaagctatccatgacaacatatacacaccaaggaaatatcaggttgaacttcttgaagcagctcttgaacataatactatagtctgcttaaatactggctcagggaagacctttatcgcagtgctcctaatcaaagaactctcccaccaaattcgtggcgagaatgggaagaggacagttttcctggtgaatgcagcgtcatctgtggctcagcaagcatctactgtaagaacacactctgatctccaagtaggcgactatatgtcagaggacatgacatcatggcccgaggagatgtggaacagagagatgatagagaatcaggtgctggtgatgacgtgccacatcttcctgcatgttttaaagaatggagtcttgccactatcaaagatcaacctgctggtttttgacgaatgccaccttgcaatcactggccatccttatcgggaaataatgaagatttgtgaaggttgccccagctgtcctcgcattttgggtctcactgcttccattttaaatggcaaatgtgacccttgtgatttggaggagaaaattcagaacctggagaagattcttcagagcaatgcagaaactgccactgatcttgtggtgctggataggtatgcgtcgcagccgcgtgaggaggtgctggattgtggacagtaccaagatcagagtgggctctcggagaggcttttaaatgagctggacgaagccctcaattttctaaacgattgcaacttgtctgtacatagagaagatagagaccccacgtttatctccaaacaggtgctgaatgactgtcgtgctgtgttgactgtgctgggcccttggtgtgcggataaagctgcaggaatcatggttcgggagctgcagaaatatattaaacatgaacaggaagagctaaaccgcaagttcctgttgttcaccgacaccatcctgaggaaaatccatgccttatgtgaggagcatttttccccagcttccctcgacctgaagtttgtcactcccaaggtcatcagacttttggagattctccacgagtacaagcctttcgaacggcagcagtttgagagtgtggagtggtacaacaatcgcaatcaggacaattatgtttcttggagtgattctgaagatgatgatgaggacgaagaggcggaggcaaaggagaaaaccgaagcaaattttccctcgccgttcacaaatatcctctgtggaatcatctttgtggaaaggcgatatacagcggttgttttaaacagacttattaaggaggcaggaaagcaagacccagagctggcttacatcagtagcaacttcatcacagggcacagcatcggcaagaaccagcctcgcaacaagcagatggaggtggagttcagaaaacaagaggaagtcttgaggaaattcagagcccatgaaaccaacttgctcattgcaaccagcattgtggaggaaggcgtcgatatcccaaagtgcaatttggtcgttcggtttgacctgccgacagagtaccggtcgtacgtgcaatccaaaggtcgagcccgtgctccagtctccaactacatcatgctagcagacagcgaacggactaaaaccttccaagaagacctcaagacctacaaggccatagagaagatcctccgaaataagtgctcgaagtcggctgaatgcaatgattttgagctggagcctgtgaccgatgacgacaatgttctcccaccgtacgtcctgcgctcagaggacggcgggcctcgtgtcaccatgaacactgccattgggcacgtcaaccgatattgtgcgcgcttgcccagtgatccgttcactcatctcgctccgaagtgtaaaactgtagagatgaacaccggagggtatcgatccacactcttcctacctatcaactcaccactcagagttcctgtcaccgggccagtaatgaattgtgcaagactggctgagaaagctgtcgctcttctctgttgtgaaaaactccacaaaattggtgaactggatgatcatctgatgcctgtgggaaaggaaactgtgaagtatgaggaggagctggacctgcatgatgaagaggagacaagcgtgccaggaagaccaggctccactaaacggagacagtgctccccaaaagccataccagagtgtctgcggggttgttaccctgtgccagagcagccttgctacctttacgttattgggatggtcctcaccacccctctacctgacgaactcaacttccggcggaggaagctgtatccaccagaggacacaacccgatgttttggcattctgacagctaaaccaataccccggatccctcatttccctgtgtacactcgttctggtgaggtgaccatctccattgagctgcagaagtcgggctttagtctaagtgcggagcagctggagctgatcacacgtctgcatcagtacatcttctcccacatcctccgtctggaaaagccagcactagagtttaagcctgtagaggcagattctgcctactgtgttctacctctcaacatcgttgaggattccaatactttggatctggatttcaagttcatggaggatattgaaaagtctgaagcacgcattggcattccaaacactcagtacaccaagcaaaacccattcatcttcaaattggaggactaccaggatgctgtcatcattccaaggtatcgtaattttgaccagccgcatcggttctacgtggctgacgtttacacagacctcaccccgctcagtaaattcccctctccagagtacgagacttttgccgaatactataaaaccaagtacaacctggacctgtcaaatgttaatcagcccctactggatgtggaccacacatcttcaagattgaatcttttaactccccggcaccttaatcaaaaggggaaagcccttcctctcagcagtgcggagaagagaaaggccaagtgggaaagcctacaaaacaaacagattttagttccggagctctgtgccattcaccccatcccagcctctttgtggaggaaagccgtctgccttcccagcattctctatagacttcactgccttctgacggccgaagagctgcggtctcagacagccatcgatgctggcgtaggggctcagaccttgcctcctgatttcaggtatcctaatttggatttcggatggaagaaatccatcgacagcaagtctttcatctcctgccccagtgcatgtatggaagaagacgacgatcactgtaaactcggcacaagctccgattcaaaccacactgcccccgagagctgcagtatggaggtctcccagcctccagaaggcgctcccaacacaccagatgaaaagctagaaaccctcactctccctgtgactgatctaaacaaagactgtttcccaaacctcccaaacggcactcaggccgacagcgacgacctccctcacagaagtgacgtttgccaatgctctcagctgggccctctggagagagacctatcaacacaaaccactacctcagtttcagtgcggccctctccagctggagaaccacagccatggcccagcgatgaatgtacaggcaggagctcggatctctgcgacccacatgtgaagaaacctacctcaaagcattgccctaaatcggagacggcgactagcaccccagcaccttcagaaacgtcatcagaggactgtagatcagcctgcgctggtccagcctgggattcgcccaaaaccctgggcccgaaccccgggctcatcctgcaggccctgactctctccaacgccagtgacggcttcaatctggaacgcctggagatgctgggcgactccttcctgaaacacgccatcaccacatacctgttctgcacttaccctgacgcccacgagggcagactgtcctacatgagaagcaagaaggtcagcaactgtaacctgtatcggctggggaagaagaagggtcttccgagtcgaatggtggtgtccatctttgacccgccggtaaactggcttcctccaggctacgtcgtgaatcaggacaaaagcagcacagacaagtgggactcagatgagaataaagatttagcgaatggaaaagccagcgatgacgaagacgaggatgacgatgatgagccggaagaagcagaggtcgagccatctaaagaagatgtaaatgttgaagacgacctggagtattattacgaacacatccgcttcatcgacagcatgttaatcggctctggcgctttcggcaagaagatctccctccagcccacagaccccggctacgaatggaaagctcctaaaaaagcccacaactcccacttctcgccagacgggggtgctgacgagttcgattacagctcctgggacgccatgtgttacctggaccccagtaaagcaggtgaggaggacgatttcgtggtgggcttctggaatccctctgaggaaaactgcggcacggacatcgggaaacagtccatctcttatgaccttcacacggagcagtgcatcgcagataagagcatagcggactgtgtggaggctctgctgggctgctatctgaccagctgtggtgagcgagcggctcagctgtttctctgctctctgggcctgaaggtgctaccaccggagaagcagagttcgggaggctctgccgagctccagtacggctggctgaagatcccaccacgctgcatgttcgaacatcctgacgctgaacgcacgctcaaccacctcatctctggcttcctgaacttcgagagcaagatcaactacacgtttaagaacaaggcgtacctgctgcaggccttcacacacgcctcgtatcattacaacaccattacagattgttatcagcggttggagtttcttggtgatgcaattctagactacctcataaccaagcacctttatgaagacccccggcagcactcgcccggcgtgctgaccgacctgcgctctgcacttgtcaacaacaccatattcgcttccctggctgtcaagtatgattaccacaagtacttcaaagctgtctcgccagaactcttccacgtgatcgacgattttgtgcaatttcaactggagaagaatgaaatgcaaggaatggattcagagcttcgccgatcggaggaagatgaagagaaagaggaagacattgaagtccccaaagcaatgggagacatctttgaatcgctagctggtgcaatttacatggatagcgggatgtcacttgagacagtttggcaagtgtattatccaatgatgaggccgctcatagaaaaattctccgctaatgtccctcgatccccagtgcgtgaactcctggagatggagccagagacagctaagttcagccctgcggaaagaacttatgatggaaaggtacgggtgacggtggaagtcgtgggcaaaggcaagttcaaaggcgtaggacgcagctaccggatagccaagtcagcagccgcccgccgagccctgcgcagtctcaaagccaaccaacctcaggtccaaaacaactgagacacccggtcaaatacgccgcaatgaaccaatccagtcacgggatttcagctcaattcacatggggttcatatttcatgttattctttacgtgcgcaaacacaatctttttttctccccagctttgttggatcacgagtgcttttcatgtatcgcaagtgttaagaaaaaggtcaggtcttcttacacccacaatttccctatttttattaacatttaaaaaaagaaagatatatgctctgcttcgtagtagtggttaaaatagctaaagcttataggtagtattacagtgtacatagttcataactccaagctatcaactaagtaagagaaataaaaaaaaagtgacatacaaacacaaaattcctcaatctgtgcactagtgccaggaagggcacgtaagatggtgttggtattggaagtgtttttatcttgagatgactttactctcaatcaaacttgcacttctgtagggtccgttttattaggtagtttttttttttccgccagatcacagcggaatcgttttagatctatattgtattgaaagtgaaaggcccttgcatccttgagacagataggaatttgacattcccgattactgtaatcagcatagttgtgaacggcacttgaggatgcatgttcgtgtagccaaccggatgggttgtatagacgtcataaagctacgttatattaaaaaacaaaaaagaattacgctattaaatgtttattacgacatatatatgttgatacttgggtttcagtaatgtcttttgatactgatattgatgatatttagttgacagtctttatgaacattagatgtctccatagactgacttagttttgatataacgacacgaacgataaacaggaggacatatcacctgggaaaatatgctgcagattttatatttaaaaaaaagaaaaaaacaacaacggaaagagaaaaatagcatcggataattctgtaagacacaaagcacctttacgtacgtctttaggatatttcgctagatgacttcacgcgcatcgcttaccaaagtcgatattgatgcagcgtcatgaggtcgcacctgtaaaaatcgatccctcaacattcacacatttggagatgtggtaaccagcctttaatttagcgtaaatgtgttgtagcctctcgtctagcctaaatgttttcatattaataggcattcttcacttgaatacctcagttaattgcatgcatgttttttttttttggtgctatgtttaagcttgaatttctcatcttttttgcactgtaactgtattacctcttaattttgtctttttgaaatctgttgggttggtttttctgttctgtcagctcgtcaggctgtagaaatcatttccctgttgtgtattcttttagtttttatgcttgaaggggaaatgctgaggaaaaaaaaaaaacagttctccgcacataagcttgatgcatttctgatgagctcggattttccttcacgtgaaaactgttgtgtatcctattagatggggttgcttgacacttgaaaaaaatcgatggattgcactcttataagccatgtgtctcactttttattctctctttcagtcttaccaagtctaatctgttaaaaaaacagtaaactaatcattgataccccatatataagggtgcaaattttaataaaaaatgtgtgaaattgaatttttacatcttaaaggctacctaatttccccctatctcattctgtctgtttagttattatgttatggacaaactattcctgaagttacatttatcccagccattgctacctcagaagatccttgcgaatagtttggccttatcataagatcttgttgtgcggatatgccttctaacaaatctgaatggcattaaggcacagtattgcttgaaaaaaaaaacgcttatcagcaccttaacagggggataaatatatactcatgactatttgcactagaatacattcccactgacattaagtttgcatcttttaaatggagtttgctaaaaaagcggtgcctttcaactctgtaacatcgaaactctcgtcttatgctactgtagcaagttttcgcattttggtgccatgctttatactggatattgccttccaattgatttgttggtcatttcgtaaaccatctaaaatttgacatcggtcctgtcttgagaatgagtgcaatctgtttcaattttcaagagttgagcgaccctctttacatgatctcagtcgcaaccccagaatttagtattgatagttattggaattgagcgggattcacatatttgctcagccaatggcgtgaatttgtgcatcagggtcaatgtgcgccagccctgcaatatgacactgtttctgtaacccttaaccctcagactattgcaactttattttgtttgtttgtgtgtgttcatatttttctagcttgttacgtattccccccctcccctcctcaagcctctaaaaggcacacacttatttacctttcacaagctttcttctcactgttggttttgaactttcagagaatgtgaaatcacaaatatggtgccaccgcatggatatgaactttttgttttcttttctttttttccccggacttattttttttgcaatctaataatcaattatcagttcccacagaactgataacaccttaaaaaaaggaaagaattggagtgttttatcatctgtgggagcgttttgttaaagtggtcctccatcgtatcatatgctgcagattgtattttccttcatggtggagaataattctttgtgtgttgtttatttttactttctttcttttctttttaaacatgtagcacaaataagcattgcactcgggcgccatactttacctcatgtcagaacgataaaaaaataaaataagataaaatacaaaacgtgtatatatgatgccgtaacgtttaaaggaataacttgtggtttcggccttgctgctgtttgcaacgctggtattgtaccaatgtatttaaaaaaaaaagtgatcggagagatacaatgtgcctgcaggatatcatcagagaaaaacactgtagaaaagtagtttcaaatctctacaatctggggctaaatatgtgtcctatgtgtacattcatgtcctgccttaatgtaattctttgaatatggaattgtaatgtaacccgtcaagtctttggactggcatgattttaatatgttggggccgcgtcgtccctttccccataatcccctttctcccatattagttggagtatatacatcctgatgtattagtgcatgtcagtgaagactttcccttctcaccaacctgtatttcctttttagactaaatacattgtatagatctgattacgtcagccctagatttatttacaagggctttatttcataacaaagtgtcatatttgttttttttaaagacaaaaaaaatattgtaattgcctgatttaaaagtcaaatgcactcttagcagcagcaaggtgtttaaagacaacataacaggactggaatgtgtggcgagctccttttgcggggagtttatgggattgttgagcaccgtggagcactaaaagttttgaacgggaattatgggccacaaactgcagctcaatttctgtatttttaagggacgtgtatttaaatgactctttctcattcatactgtatcagtgctgcagtggtatgcattctgcaccttatggatcacaaaaacctttacaaagtctgcccccctcccccctcttttttaagtaattgtagctgagtatatctacaataaagttatggtatggtcgttca
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]