ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2024-05-03 23:48:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001161453 9596 bp mRNA linear VRT 09-DEC-2023
DEFINITION Danio rerio dicer 1, ribonuclease type III (dicer1), mRNA.
ACCESSION NM_001161453 XM_678382
VERSION NM_001161453.2
KEYWORDS RefSeq.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 9596)
AUTHORS Brown W, Bardhan A, Darrah K, Tsang M and Deiters A.
TITLE Optical Control of MicroRNA Function in Zebrafish Embryos
JOURNAL J Am Chem Soc 144 (37), 16819-16826 (2022)
PUBMED 36073798
REFERENCE 2 (bases 1 to 9596)
AUTHORS Zhang X, Yang F, Liu F, Tian Q, Hu M, Li P and Zeng Y.
TITLE Conservation of Differential Animal MicroRNA Processing by Drosha
and Dicer
JOURNAL Front Mol Biosci 8, 730006 (2022)
PUBMED 35047552
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 9596)
AUTHORS Maerker M, Getwan M, Dowdle ME, McSheene JC, Gonzalez V, Pelliccia
JL, Hamilton DS, Yartseva V, Vejnar C, Tingler M, Minegishi K, Vick
P, Giraldez AJ, Hamada H, Burdine RD, Sheets MD, Blum M and
Schweickert A.
TITLE Bicc1 and Dicer regulate left-right patterning through
post-transcriptional control of the Nodal inhibitor Dand5
JOURNAL Nat Commun 12 (1), 5482 (2021)
PUBMED 34531379
REMARK Publication Status: Online-Only
REFERENCE 4 (bases 1 to 9596)
AUTHORS Kontur C, Jeong M, Cifuentes D and Giraldez AJ.
TITLE Ythdf m6A Readers Function Redundantly during Zebrafish Development
JOURNAL Cell Rep 33 (13), 108598 (2020)
PUBMED 33378672
REFERENCE 5 (bases 1 to 9596)
AUTHORS Liu Y, Zhu Z, Ho IHT, Shi Y, Li J, Wang X, Chan MTV and Cheng CHK.
TITLE Genetic Deletion of miR-430 Disrupts Maternal-Zygotic Transition
and Embryonic Body Plan
JOURNAL Front Genet 11, 853 (2020)
PUBMED 32849832
REMARK Publication Status: Online-Only
REFERENCE 6 (bases 1 to 9596)
AUTHORS Thatcher EJ, Paydar I, Anderson KK and Patton JG.
TITLE Regulation of zebrafish fin regeneration by microRNAs
JOURNAL Proc Natl Acad Sci U S A 105 (47), 18384-18389 (2008)
PUBMED 19015519
REFERENCE 7 (bases 1 to 9596)
AUTHORS Giraldez AJ, Mishima Y, Rihel J, Grocock RJ, Van Dongen S, Inoue K,
Enright AJ and Schier AF.
TITLE Zebrafish MiR-430 promotes deadenylation and clearance of maternal
mRNAs
JOURNAL Science 312 (5770), 75-79 (2006)
PUBMED 16484454
REFERENCE 8 (bases 1 to 9596)
AUTHORS Miska EA.
TITLE How microRNAs control cell division, differentiation and death
JOURNAL Curr Opin Genet Dev 15 (5), 563-568 (2005)
PUBMED 16099643
REMARK Review article
REFERENCE 9 (bases 1 to 9596)
AUTHORS Giraldez AJ, Cinalli RM, Glasner ME, Enright AJ, Thomson JM,
Baskerville S, Hammond SM, Bartel DP and Schier AF.
TITLE MicroRNAs regulate brain morphogenesis in zebrafish
JOURNAL Science 308 (5723), 833-838 (2005)
PUBMED 15774722
REFERENCE 10 (bases 1 to 9596)
AUTHORS Wienholds E, Koudijs MJ, van Eeden FJ, Cuppen E and Plasterk RH.
TITLE The microRNA-producing enzyme Dicer1 is essential for zebrafish
development
JOURNAL Nat Genet 35 (3), 217-218 (2003)
PUBMED 14528306
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AL772219.7.
On Oct 26, 2010 this sequence version replaced NM_001161453.1.
Sequence Note: The RefSeq transcript and protein were derived from
genomic sequence to make the sequence consistent with the reference
genome assembly. The genomic coordinates used for the transcript
record were based on alignments.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
CDS exon combination :: GDQH01002492.1 [ECO:0000331]
RNAseq introns :: mixed/partial sample support SAMEA2168446,
SAMEA2168447 [ECO:0000350]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-108 AL772219.7 113473-113580 c
109-297 AL772219.7 113113-113301 c
298-451 AL772219.7 110477-110630 c
452-579 AL772219.7 110244-110371 c
580-714 AL772219.7 109992-110126 c
715-875 AL772219.7 105466-105626 c
876-1044 AL772219.7 105148-105316 c
1045-1517 AL772219.7 104581-105053 c
1518-1650 AL772219.7 102825-102957 c
1651-1893 AL772219.7 102225-102467 c
1894-2048 AL772219.7 101985-102139 c
2049-2181 AL772219.7 101778-101910 c
2182-2257 AL772219.7 99471-99546 c
2258-2397 AL772219.7 99251-99390 c
2398-2577 AL772219.7 98872-99051 c
2578-2791 AL772219.7 96127-96340 c
2792-2945 AL772219.7 94387-94540 c
2946-3128 AL772219.7 94084-94266 c
3129-3234 AL772219.7 93881-93986 c
3235-3410 AL772219.7 93529-93704 c
3411-4179 AL772219.7 90130-90898 c
4180-4332 AL772219.7 86834-86986 c
4333-5107 AL772219.7 81281-82055 c
5108-5376 AL772219.7 79514-79782 c
5377-5539 AL772219.7 76715-76877 c
5540-5615 AL772219.7 76459-76534 c
5616-9596 AL772219.7 70216-74196 c
FEATURES Location/Qualifiers
source 1..9596
/organism="Danio rerio"
/mol_type="mRNA"
/strain="Tuebingen"
/db_xref="taxon:7955"
/chromosome="17"
/map="17"
gene 1..9596
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="dicer 1, ribonuclease type III"
/db_xref="GeneID:324724"
/db_xref="ZFIN:ZDB-GENE-030131-3445"
exon 1..108
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 109..297
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
misc_feature 139..141
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="upstream in-frame stop codon"
CDS 184..5781
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/EC_number="3.1.26.3"
/note="dsRNA-specific ribonuclease; Dicer1, Dcr-1 homolog"
/codon_start=1
/product="endoribonuclease Dicer"
/protein_id="NP_001154925.1"
/db_xref="GeneID:324724"
/db_xref="ZFIN:ZDB-GENE-030131-3445"
/translation="
MAGLQLVTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGKTFIAVLLIKELSHQIRGENGKRTVFLVNAASSVAQQASTVRTHSDLQVGDYMSEDMTSWPEEMWNREMIENQVLVMTCHIFLHVLKNGVLPLSKINLLVFDECHLAITGHPYREIMKICEGCPSCPRILGLTASILNGKCDPCDLEEKIQNLEKILQSNAETATDLVVLDRYASQPREEVLDCGQYQDQSGLSERLLNELDEALNFLNDCNLSVHREDRDPTFISKQVLNDCRAVLTVLGPWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKIHALCEEHFSPASLDLKFVTPKVIRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEAEAKEKTEANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIMLADSERTKTFQEDLKTYKAIEKILRNKCSKSAECNDFELEPVTDDDNVLPPYVLRSEDGGPRVTMNTAIGHVNRYCARLPSDPFTHLAPKCKTVEMNTGGYRSTLFLPINSPLRVPVTGPVMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCSPKAIPECLRGCYPVPEQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFSLSAEQLELITRLHQYIFSHILRLEKPALEFKPVEADSAYCVLPLNIVEDSNTLDLDFKFMEDIEKSEARIGIPNTQYTKQNPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLSNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQTAIDAGVGAQTLPPDFRYPNLDFGWKKSIDSKSFISCPSACMEEDDDHCKLGTSSDSNHTAPESCSMEVSQPPEGAPNTPDEKLETLTLPVTDLNKDCFPNLPNGTQADSDDLPHRSDVCQCSQLGPLERDLSTQTTTSVSVRPSPAGEPQPWPSDECTGRSSDLCDPHVKKPTSKHCPKSETATSTPAPSETSSEDCRSACAGPAWDSPKTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSSTDKWDSDENKDLANGKASDDEDEDDDDEPEEAEVEPSKEDVNVEDDLEYYYEHIRFIDSMLIGSGAFGKKISLQPTDPGYEWKAPKKAHNSHFSPDGGADEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEENCGTDIGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPPEKQSSGGSAELQYGWLKIPPRCMFEHPDAERTLNHLISGFLNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVQNN"
misc_feature 277..858
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="DEXH-box helicase domain of endoribonuclease Dicer;
Region: DEXHc_dicer; cd18034"
/db_xref="CDD:350792"
misc_feature order(277..288,295..297,346..369,481..483,667..669,
760..762)
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:350792"
misc_feature order(445..450,517..522,592..594,598..603,610..612,
685..693)
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="nucleic acid binding site [nucleotide binding];
other site"
/db_xref="CDD:350792"
misc_feature 664..675
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="propagated from UniProtKB/Swiss-Prot (Q6TV19.2);
Region: DECH box"
misc_feature 952..1236
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="Partner-binding domain of the endoribonuclease
Dicer; Region: Dicer_PBD; cd15903"
/db_xref="CDD:277191"
misc_feature order(967..972,979..981,985..990,1165..1170,1177..1182,
1189..1191,1198..1203,1210..1212)
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="Trbp binding interface [polypeptide binding]; other
site"
/db_xref="CDD:277191"
misc_feature 1255..1833
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="C-terminal helicase domain of the endoribonuclease
Dicer; Region: SF2_C_dicer; cd18802"
/db_xref="CDD:350189"
misc_feature 1372..1434
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="propagated from UniProtKB/Swiss-Prot (Q6TV19.2);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature order(1486..1494,1702..1704,1759..1761,1765..1767)
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:350189"
misc_feature order(1714..1716,1720..1722,1795..1797,1801..1803)
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:350189"
misc_feature 2029..2295
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="Dicer dimerization domain; Region: Dicer_dimer;
pfam03368"
/db_xref="CDD:427264"
misc_feature 2320..2379
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="propagated from UniProtKB/Swiss-Prot (Q6TV19.2);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 2797..3165
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="PAZ domain, dicer_like subfamily. Dicer is an RNAse
involved in cleaving dsRNA in the RNA interference
pathway. It generates dsRNAs which are approximately 20 bp
long (siRNAs), which in turn target hydrolysis of
homologous RNAs. PAZ domains are named...; Region:
PAZ_dicer_like; cd02843"
/db_xref="CDD:239209"
misc_feature order(2986..2988,3025..3027,3043..3045,3055..3057,
3109..3111,3133..3135,3139..3141)
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="nucleic acid-binding interface [nucleotide
binding]; other site"
/db_xref="CDD:239209"
misc_feature 3514..3609
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="propagated from UniProtKB/Swiss-Prot (Q6TV19.2);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 3751..3960
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="propagated from UniProtKB/Swiss-Prot (Q6TV19.2);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 4015..>4290
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="Ribonuclease III family; Region: RIBOc; smart00535"
/db_xref="CDD:197778"
misc_feature order(4066..4071,4078..4083,4090..4092,4099..4104,
4111..4116,4120..4128,4156..4158)
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238333"
misc_feature 4300..4434
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="propagated from UniProtKB/Swiss-Prot (Q6TV19.2);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 5008..5766
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="dsRNA-specific ribonuclease [Transcription];
Region: Rnc; COG0571"
/db_xref="CDD:223644"
misc_feature 5428..5430
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/note="Important for activity. /evidence=ECO:0000250;
propagated from UniProtKB/Swiss-Prot (Q6TV19.2); other
site"
exon 298..451
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 452..579
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 580..714
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 715..875
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 876..1044
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 1045..1517
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 1518..1650
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 1651..1893
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 1894..2048
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 2049..2181
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 2182..2257
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 2258..2397
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 2398..2577
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 2578..2791
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 2792..2945
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 2946..3128
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 3129..3234
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 3235..3410
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 3411..4179
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 4180..4332
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 4333..5107
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 5108..5376
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 5377..5539
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 5540..5615
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
exon 5616..9596
/gene="dicer1"
/gene_synonym="fc39d11; fc74b05; wu:fc39d11; wu:fc74b05"
/inference="alignment:Splign:2.1.0"
ORIGIN
cagagtaactcaaggggagaaaagaatgagctgattttaagagctcagataatgatgcccagaataagtgcggcctggtcacagagcaaagtggggaacgcacacgcttgagcattagatggccatgatgcaatgagataaacactggatgactggaggtctcctgcttatcagtctctaagcatggctggcctacagctggtgacccctgcctcctcacccatggggcccttctttggtctcccgtggcaacaggaagctatccatgacaacatatacacaccaaggaaatatcaggttgaacttcttgaagcagctcttgaacataatactatagtctgcttaaatactggctcagggaagacctttatcgcagtgctcctaatcaaagaactctcccaccaaattcgtggcgagaatgggaagaggacagttttcctggtgaatgcagcgtcatctgtggctcagcaagcatctactgtaagaacacactctgatctccaagtaggcgactatatgtcagaggacatgacatcatggcccgaggagatgtggaacagagagatgatagagaatcaggtgctggtgatgacgtgccacatcttcctgcatgttttaaagaatggagtcttgccactatcaaagatcaacctgctggtttttgacgaatgccaccttgcaatcactggccatccttatcgggaaataatgaagatttgtgaaggttgccccagctgtcctcgcattttgggtctcactgcttccattttaaatggcaaatgtgacccttgtgatttggaggagaaaattcagaacctggagaagattcttcagagcaatgcagaaactgccactgatcttgtggtgctggataggtatgcgtcgcagccgcgtgaggaggtgctggattgtggacagtaccaagatcagagtgggctctcggagaggcttttaaatgagctggacgaagccctcaattttctaaacgattgcaacttgtctgtacatagagaagatagagaccccacgtttatctccaaacaggtgctgaatgactgtcgtgctgtgttgactgtgctgggcccttggtgtgcggataaagctgcaggaatcatggttcgggagctgcagaaatatattaaacatgaacaggaagagctaaaccgcaagttcctgttgttcaccgacaccatcctgaggaaaatccatgccttatgtgaggagcatttttccccagcttccctcgacctgaagtttgtcactcccaaggtcatcagacttttggagattctccacgagtacaagcctttcgaacggcagcagtttgagagtgtggagtggtacaacaatcgcaatcaggacaattatgtttcttggagtgattctgaagatgatgatgaggacgaagaggcggaggcaaaggagaaaaccgaagcaaattttccctcgccgttcacaaatatcctctgtggaatcatctttgtggaaaggcgatatacagcggttgttttaaacagacttattaaggaggcaggaaagcaagacccagagctggcttacatcagtagcaacttcatcacagggcacagcatcggcaagaaccagcctcgcaacaagcagatggaggtggagttcagaaaacaagaggaagtcttgaggaaattcagagcccatgaaaccaacttgctcattgcaaccagcattgtggaggaaggcgtcgatatcccaaagtgcaatttggtcgttcggtttgacctgccgacagagtaccggtcgtacgtgcaatccaaaggtcgagcccgtgctccagtctccaactacatcatgctagcagacagcgaacggactaaaaccttccaagaagacctcaagacctacaaggccatagagaagatcctccgaaataagtgctcgaagtcggctgaatgcaatgattttgagctggagcctgtgaccgatgacgacaatgttctcccaccgtacgtcctgcgctcagaggacggcgggcctcgtgtcaccatgaacactgccattgggcacgtcaaccgatattgtgcgcgcttgcccagtgatccgttcactcatctcgctccgaagtgtaaaactgtagagatgaacaccggagggtatcgatccacactcttcctacctatcaactcaccactcagagttcctgtcaccgggccagtaatgaattgtgcaagactggctgagaaagctgtcgctcttctctgttgtgaaaaactccacaaaattggtgaactggatgatcatctgatgcctgtgggaaaggaaactgtgaagtatgaggaggagctggacctgcatgatgaagaggagacaagcgtgccaggaagaccaggctccactaaacggagacagtgctccccaaaagccataccagagtgtctgcggggttgttaccctgtgccagagcagccttgctacctttacgttattgggatggtcctcaccacccctctacctgacgaactcaacttccggcggaggaagctgtatccaccagaggacacaacccgatgttttggcattctgacagctaaaccaataccccggatccctcatttccctgtgtacactcgttctggtgaggtgaccatctccattgagctgcagaagtcgggctttagtctaagtgcggagcagctggagctgatcacacgtctgcatcagtacatcttctcccacatcctccgtctggaaaagccagcactagagtttaagcctgtagaggcagattctgcctactgtgttctacctctcaacatcgttgaggattccaatactttggatctggatttcaagttcatggaggatattgaaaagtctgaagcacgcattggcattccaaacactcagtacaccaagcaaaacccattcatcttcaaattggaggactaccaggatgctgtcatcattccaaggtatcgtaattttgaccagccgcatcggttctacgtggctgacgtttacacagacctcaccccgctcagtaaattcccctctccagagtacgagacttttgccgaatactataaaaccaagtacaacctggacctgtcaaatgttaatcagcccctactggatgtggaccacacatcttcaagattgaatcttttaactccccggcaccttaatcaaaaggggaaagcccttcctctcagcagtgcggagaagagaaaggccaagtgggaaagcctacaaaacaaacagattttagttccggagctctgtgccattcaccccatcccagcctctttgtggaggaaagccgtctgccttcccagcattctctatagacttcactgccttctgacggccgaagagctgcggtctcagacagccatcgatgctggcgtaggggctcagaccttgcctcctgatttcaggtatcctaatttggatttcggatggaagaaatccatcgacagcaagtctttcatctcctgccccagtgcatgtatggaagaagacgacgatcactgtaaactcggcacaagctccgattcaaaccacactgcccccgagagctgcagtatggaggtctcccagcctccagaaggcgctcccaacacaccagatgaaaagctagaaaccctcactctccctgtgactgatctaaacaaagactgtttcccaaacctcccaaacggcactcaggccgacagcgacgacctccctcacagaagtgacgtttgccaatgctctcagctgggccctctggagagagacctatcaacacaaaccactacctcagtttcagtgcggccctctccagctggagaaccacagccatggcccagcgatgaatgtacaggcaggagctcggatctctgcgacccacatgtgaagaaacctacctcaaagcattgccctaaatcggagacggcgactagcaccccagcaccttcagaaacgtcatcagaggactgtagatcagcctgcgctggtccagcctgggattcgcccaaaaccctgggcccgaaccccgggctcatcctgcaggccctgactctctccaacgccagtgacggcttcaatctggaacgcctggagatgctgggcgactccttcctgaaacacgccatcaccacatacctgttctgcacttaccctgacgcccacgagggcagactgtcctacatgagaagcaagaaggtcagcaactgtaacctgtatcggctggggaagaagaagggtcttccgagtcgaatggtggtgtccatctttgacccgccggtaaactggcttcctccaggctacgtcgtgaatcaggacaaaagcagcacagacaagtgggactcagatgagaataaagatttagcgaatggaaaagccagcgatgacgaagacgaggatgacgatgatgagccggaagaagcagaggtcgagccatctaaagaagatgtaaatgttgaagacgacctggagtattattacgaacacatccgcttcatcgacagcatgttaatcggctctggcgctttcggcaagaagatctccctccagcccacagaccccggctacgaatggaaagctcctaaaaaagcccacaactcccacttctcgccagacgggggtgctgacgagttcgattacagctcctgggacgccatgtgttacctggaccccagtaaagcaggtgaggaggacgatttcgtggtgggcttctggaatccctctgaggaaaactgcggcacggacatcgggaaacagtccatctcttatgaccttcacacggagcagtgcatcgcagataagagcatagcggactgtgtggaggctctgctgggctgctatctgaccagctgtggtgagcgagcggctcagctgtttctctgctctctgggcctgaaggtgctaccaccggagaagcagagttcgggaggctctgccgagctccagtacggctggctgaagatcccaccacgctgcatgttcgaacatcctgacgctgaacgcacgctcaaccacctcatctctggcttcctgaacttcgagagcaagatcaactacacgtttaagaacaaggcgtacctgctgcaggccttcacacacgcctcgtatcattacaacaccattacagattgttatcagcggttggagtttcttggtgatgcaattctagactacctcataaccaagcacctttatgaagacccccggcagcactcgcccggcgtgctgaccgacctgcgctctgcacttgtcaacaacaccatattcgcttccctggctgtcaagtatgattaccacaagtacttcaaagctgtctcgccagaactcttccacgtgatcgacgattttgtgcaatttcaactggagaagaatgaaatgcaaggaatggattcagagcttcgccgatcggaggaagatgaagagaaagaggaagacattgaagtccccaaagcaatgggagacatctttgaatcgctagctggtgcaatttacatggatagcgggatgtcacttgagacagtttggcaagtgtattatccaatgatgaggccgctcatagaaaaattctccgctaatgtccctcgatccccagtgcgtgaactcctggagatggagccagagacagctaagttcagccctgcggaaagaacttatgatggaaaggtacgggtgacggtggaagtcgtgggcaaaggcaagttcaaaggcgtaggacgcagctaccggatagccaagtcagcagccgcccgccgagccctgcgcagtctcaaagccaaccaacctcaggtccaaaacaactgagacacccggtcaaatacgccgcaatgaaccaatccagtcacgggatttcagctcaattcacatggggttcatatttcatgttattctttacgtgcgcaaacacaatctttttttctccccagctttgttggatcacgagtgcttttcatgtatcgcaagtgttaagaaaaaggtcaggtcttcttacacccacaatttccctatttttattaacatttaaaaaaagaaagatatatgctctgcttcgtagtagtggttaaaatagctaaagcttataggtagtattacagtgtacatagttcataactccaagctatcaactaagtaagagaaataaaaaaaaagtgacatacaaacacaaaattcctcaatctgtgcactagtgccaggaagggcacgtaagatggtgttggtattggaagtgtttttatcttgagatgactttactctcaatcaaacttgcacttctgtagggtccgttttattaggtagtttttttttttccgccagatcacagcggaatcgttttagatctatattgtattgaaagtgaaaggcccttgcatccttgagacagataggaatttgacattcccgattactgtaatcagcatagttgtgaacggcacttgaggatgcatgttcgtgtagccaaccggatgggttgtatagacgtcataaagctacgttatattaaaaaacaaaaaagaattacgctattaaatgtttattacgacatatatatgttgatacttgggtttcagtaatgtcttttgatactgatattgatgatatttagttgacagtctttatgaacattagatgtctccatagactgacttagttttgatataacgacacgaacgataaacaggaggacatatcacctgggaaaatatgctgcagattttatatttaaaaaaaagaaaaaaacaacaacggaaagagaaaaatagcatcggataattctgtaagacacaaagcacctttacgtacgtctttaggatatttcgctagatgacttcacgcgcatcgcttaccaaagtcgatattgatgcagcgtcatgaggtcgcacctgtaaaaatcgatccctcaacattcacacatttggagatgtggtaaccagcctttaatttagcgtaaatgtgttgtagcctctcgtctagcctaaatgttttcatattaataggcattcttcacttgaatacctcagttaattgcatgcatgttttttttttttggtgctatgtttaagcttgaatttctcatcttttttgcactgtaactgtattacctcttaattttgtctttttgaaatctgttgggttggtttttctgttctgtcagctcgtcaggctgtagaaatcatttccctgttgtgtattcttttagtttttatgcttgaaggggaaatgctgaggaaaaaaaaaaaacagttctccgcacataagcttgatgcatttctgatgagctcggattttccttcacgtgaaaactgttgtgtatcctattagatggggttgcttgacacttgaaaaaaatcgatggattgcactcttataagccatgtgtctcactttttattctctctttcagtcttaccaagtctaatctgttaaaaaaacagtaaactaatcattgataccccatatataagggtgcaaattttaataaaaaatgtgtgaaattgaatttttacatcttaaaggctacctaatttccccctatctcattctgtctgtttagttattatgttatggacaaactattcctgaagttacatttatcccagccattgctacctcagaagatccttgcgaatagtttggccttatcataagatcttgttgtgcggatatgccttctaacaaatctgaatggcattaaggcacagtattgcttgaaaaaaaaaacgcttatcagcaccttaacagggggataaatatatactcatgactatttgcactagaatacattcccactgacattaagtttgcatcttttaaatggagtttgctaaaaaagcggtgcctttcaactctgtaacatcgaaactctcgtcttatgctactgtagcaagttttcgcattttggtgccatgctttatactggatattgccttccaattgatttgttggtcatttcgtaaaccatctaaaatttgacatcggtcctgtcttgagaatgagtgcaatctgtttcaattttcaagagttgagcgaccctctttacatgatctcagtcgcaaccccagaatttagtattgatagttattggaattgagcgggattcacatatttgctcagccaatggcgtgaatttgtgcatcagggtcaatgtgcgccagccctgcaatatgacactgtttctgtaacccttaaccctcagactattgcaactttattttgtttgtttgtgtgtgttcatatttttctagcttgttacgtattccccccctcccctcctcaagcctctaaaaggcacacacttatttacctttcacaagctttcttctcactgttggttttgaactttcagagaatgtgaaatcacaaatatggtgccaccgcatggatatgaactttttgttttcttttctttttttccccggacttattttttttgcaatctaataatcaattatcagttcccacagaactgataacaccttaaaaaaaggaaagaattggagtgttttatcatctgtgggagcgttttgttaaagtggtcctccatcgtatcatatgctgcagattgtattttccttcatggtggagaataattctttgtgtgttgtttatttttactttctttcttttctttttaaacatgtagcacaaataagcattgcactcgggcgccatactttacctcatgtcagaacgataaaaaaataaaataagataaaatacaaaacgtgtatatatgatgccgtaacgtttaaaggaataacttgtggtttcggccttgctgctgtttgcaacgctggtattgtaccaatgtatttaaaaaaaaaagtgatcggagagatacaatgtgcctgcaggatatcatcagagaaaaacactgtagaaaagtagtttcaaatctctacaatctggggctaaatatgtgtcctatgtgtacattcatgtcctgccttaatgtaattctttgaatatggaattgtaatgtaacccgtcaagtctttggactggcatgattttaatatgttggggccgcgtcgtccctttccccataatcccctttctcccatattagttggagtatatacatcctgatgtattagtgcatgtcagtgaagactttcccttctcaccaacctgtatttcctttttagactaaatacattgtatagatctgattacgtcagccctagatttatttacaagggctttatttcataacaaagtgtcatatttgttttttttaaagacaaaaaaaatattgtaattgcctgatttaaaagtcaaatgcactcttagcagcagcaaggtgtttaaagacaacataacaggactggaatgtgtggcgagctccttttgcggggagtttatgggattgttgagcaccgtggagcactaaaagttttgaacgggaattatgggccacaaactgcagctcaatttctgtatttttaagggacgtgtatttaaatgactctttctcattcatactgtatcagtgctgcagtggtatgcattctgcaccttatggatcacaaaaacctttacaaagtctgcccccctcccccctcttttttaagtaattgtagctgagtatatctacaataaagttatggtatggtcgttca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]