2024-11-01 08:18:31, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_001109704 1662 bp mRNA linear VRT 18-JAN-2021 DEFINITION Danio rerio tripartite motif containing 35-28 (trim35-28), mRNA. ACCESSION NM_001109704 XM_682685 VERSION NM_001109704.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 1662) AUTHORS Yu T, Kuang H, Chen J, Lin X, Wu Y, Chen K, Zhang M, Zhang W and Wen Z. TITLE Tripartite-motif family protein 35-28 regulates microglia development by preventing necrotic death of microglial precursors in zebrafish JOURNAL J Biol Chem 295 (26), 8846-8856 (2020) PUBMED 32398256 REMARK GeneRIF: Tripartite-motif family protein 35-28 regulates microglia development by preventing necrotic death of microglial precursors in zebrafish. REFERENCE 2 (bases 1 to 1662) AUTHORS Langevin C, Aleksejeva E, Houel A, Briolat V, Torhy C, Lunazzi A, Levraud JP and Boudinot P. TITLE FTR83, a Member of the Large Fish-Specific finTRIM Family, Triggers IFN Pathway and Counters Viral Infection JOURNAL Front Immunol 8, 617 (2017) PUBMED 28603526 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1662) AUTHORS Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and Hertzano R. TITLE RFX transcription factors are essential for hearing in mice JOURNAL Nat Commun 6, 8549 (2015) PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 1662) AUTHORS Boudinot P, van der Aa LM, Jouneau L, Du Pasquier L, Pontarotti P, Briolat V, Benmansour A and Levraud JP. TITLE Origin and evolution of TRIM proteins: new insights from the complete TRIM repertoire of zebrafish and pufferfish JOURNAL PLoS One 6 (7), e22022 (2011) PUBMED 21789205 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC151916.1. On Oct 5, 2007 this sequence version replaced XM_682685.2. ##Evidence-Data-START## Transcript exon combination :: BC151916.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1662 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /chromosome="16" /map="16" gene 1..1662 /gene="trim35-28" /gene_synonym="zgc:171672" /note="tripartite motif containing 35-28" /db_xref="GeneID:559351" /db_xref="ZFIN:ZDB-GENE-071004-19" exon 1..541 /gene="trim35-28" /gene_synonym="zgc:171672" /inference="alignment:Splign:2.1.0" misc_feature 98..100 /gene="trim35-28" /gene_synonym="zgc:171672" /note="upstream in-frame stop codon" CDS 113..1546 /gene="trim35-28" /gene_synonym="zgc:171672" /codon_start=1 /product="tripartite motif containing 35-28" /protein_id="NP_001103174.1" /db_xref="GeneID:559351" /db_xref="ZFIN:ZDB-GENE-071004-19" /translation="
MADSSDDDITDRPPLLETDLTCPVCKDIFKEPELLSCSHSFCKVCLEGSWKNQTKRQCPMCRKCCDGETPIPNRALHNACVSYKKERNRRGATTGSEEELCGLHQRPFQLFCIKDEEPVCVECVTLHPGHELVPTEQGVPFCKDELTMKIKILESKLDSFKRMKKRYKETITFIEGQTKEAENQIKQEFERLHQVLNEEEKTRLLALSREEDEKKQVVTEKIEAIGRDITGLAELIQSVKREMGAEDLTFLLNFQKLKRRTQWTGDDPRRVYGALINMALHVGALGYKIWESMQAHVTCLPVILDPNTASPWLSISPDFSSMQESRERQSFPDNPERFDPCVFVLGSEGFSSGRHRWEVRVADHPKWILGVCKESVVRKRKFTVTTTAGVWTIGLSKGVYNALTSPRTVLNLERRPETVRVKVNMEKGEVSFWDTGNNKHLCTFNDKFTGKLFPIFGPGLQSTPITILPAKVNIHKQ"
misc_feature 158..>304 /gene="trim35-28" /gene_synonym="zgc:171672" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order(176..178,185..187,221..223,227..229,236..238, 245..247,284..286,293..295) /gene="trim35-28" /gene_synonym="zgc:171672" /note="cross-brace motif; other site" /db_xref="CDD:438111" misc_feature 410..523 /gene="trim35-28" /gene_synonym="zgc:171672" /note="B-box-type zinc finger superfamily; Region: Bbox_SF; cl00034" /db_xref="CDD:469587" misc_feature 539..>829 /gene="trim35-28" /gene_synonym="zgc:171672" /note="coiled-coil (CC) domain of Drosophila brain tumor (brat) and similar proteins; Region: CC_brat-like; cl29238" /db_xref="CDD:475168" misc_feature 1013..1519 /gene="trim35-28" /gene_synonym="zgc:171672" /note="PRY/SPRY domain in tripartite motif-containing protein 35 (TRIM35); Region: SPRY_PRY_TRIM35; cd12893" /db_xref="CDD:293950" exon 542..637 /gene="trim35-28" /gene_synonym="zgc:171672" /inference="alignment:Splign:2.1.0" exon 638..868 /gene="trim35-28" /gene_synonym="zgc:171672" /inference="alignment:Splign:2.1.0" exon 869..891 /gene="trim35-28" /gene_synonym="zgc:171672" /inference="alignment:Splign:2.1.0" exon 892..1010 /gene="trim35-28" /gene_synonym="zgc:171672" /inference="alignment:Splign:2.1.0" exon 1011..1646 /gene="trim35-28" /gene_synonym="zgc:171672" /inference="alignment:Splign:2.1.0" ORIGIN
agcaaacacgagaggattcgtgtaattaatatcgttatttataaaacagcgtttaaactctcctaccgatataacattagtagtgaaagcgaaactatagctcggatccgacatggcagatagcagtgacgatgatattacagacaggccacctcttctggagacagacttaacgtgtcctgtgtgcaaagacatttttaaggagcccgagttgctttcgtgtagtcacagtttctgtaaggtatgcctggaagggagctggaagaaccaaacgaaacggcagtgccccatgtgccgaaaatgctgcgacggagagacgccgatccccaaccgtgcactacataacgcctgtgtgtcctacaagaaagagagaaaccggagaggagctactacgggttcagaggaagaactctgtggtttgcaccagcggcccttccagctcttttgcatcaaagacgaagagcccgtgtgcgtggagtgcgtgactcttcatccgggacacgagctggtgcccaccgagcaaggggttcctttctgcaaggatgagcttaccatgaaaatcaaaattctggaaagcaaactggactcctttaaaagaatgaaaaaaagatacaaagaaacaatcacctttattgagggccagactaaggaggcagaaaaccaaatcaaacaggagtttgagagacttcatcaagtcttaaatgaagaggagaaaacaagactgttggctttaagtagagaggaagacgaaaagaaacaagtggtgactgagaagattgaagccatcggtcgtgacatcacaggccttgctgaactgattcagtctgtaaagagggaaatgggagctgaagatttgacctttcttctgaatttccaaaagttaaaaagaagaacccagtggactggtgatgaccccagaagggtttacggagccctcatcaacatggccttgcatgtaggcgctctgggttacaaaatctgggagagtatgcaggctcacgtcacatgtttgcctgtaatcctggatcccaacacagcttcaccatggctctccatatctcctgatttttccagcatgcaagagagtcgagaaagacagtctttcccagacaaccctgaaaggtttgatccatgtgtgtttgtactcggctcagagggtttctcctcagggcgtcatcgttgggaggtccgtgtggccgaccaccccaaatggatcttgggtgtttgcaaggagtcagtagttcggaagaggaagttcactgtgaccacaacagcaggagtttggaccatcggccttagtaaaggtgtctacaacgctctaacaagtccacgcactgtgctcaatctagagagaagacccgaaactgtcagggtgaaggtcaatatggagaagggagaggtgtctttctgggacacaggcaacaacaagcatctgtgcacgtttaacgataagttcactgggaagctctttcccatctttggcccagggctccagagcacacctatcactatcttacctgctaaagtgaacatacacaaacaataagtacaaatgacaacgcgtaagagtctaaaatgtctgcagtactatttgaatttaatcaaattaatgtaacatttgggattcagtaaaaggtcaattaacaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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