2024-11-01 08:50:52, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_001076668 1858 bp mRNA linear VRT 12-APR-2020 DEFINITION Danio rerio ring finger protein 183 (rnf183), mRNA. ACCESSION NM_001076668 VERSION NM_001076668.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 1858) AUTHORS Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and Hertzano R. TITLE RFX transcription factors are essential for hearing in mice JOURNAL Nat Commun 6, 8549 (2015) PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1858) AUTHORS Putiri E and Pelegri F. TITLE The zebrafish maternal-effect gene mission impossible encodes the DEAH-box helicase Dhx16 and is essential for the expression of downstream endodermal genes JOURNAL Dev. Biol. 353 (2), 275-289 (2011) PUBMED 21396359 COMMENT PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from BC124313.1. ##Evidence-Data-START## Transcript exon combination :: BC124313.1, EH115180.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..1858 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /chromosome="15" /map="15" gene 1..1858 /gene="rnf183" /gene_synonym="zgc:153310" /note="ring finger protein 183" /db_xref="GeneID:767730" /db_xref="ZFIN:ZDB-GENE-060929-1090" exon 1..123 /gene="rnf183" /gene_synonym="zgc:153310" /inference="alignment:Splign:2.1.0" misc_feature 109..111 /gene="rnf183" /gene_synonym="zgc:153310" /note="upstream in-frame stop codon" exon 124..1843 /gene="rnf183" /gene_synonym="zgc:153310" /inference="alignment:Splign:2.1.0" CDS 178..1128 /gene="rnf183" /gene_synonym="zgc:153310" /EC_number="2.3.2.27" /codon_start=1 /product="E3 ubiquitin-protein ligase RNF183" /protein_id="NP_001070136.1" /db_xref="GeneID:767730" /db_xref="ZFIN:ZDB-GENE-060929-1090" /translation="
MGDGREKPQSSRKGSNAKPKLDSKGSLNLGSSEQRQRADKPVRRSRSNDTENRRREASRGRERDRRDEGRPQRGRSEEGRRRGHNHEPGNRAWDKEPPKDELQDTECIVCFCNFDNVFKTPKLLSCGHTFCLECLARINVNSPEIKTLTCPICREVTEIRHGRDLPHLLNNEAIFRQLPSEMQRALSVRFKRSKGKLVLKNPPTNNSIKTTLNLPVSKKKEEQAGNNAIGAIEEGLGQATMINVGRPPNRMRGRMRRVMYSSQCYYAVVAVIISITVALMMVGIFTFVVMPNLQRPITKPLQNQTGSSAVQADSSP"
misc_feature 490..654 /gene="rnf183" /gene_synonym="zgc:153310" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order(496..498,505..507,553..555,559..561,568..570, 577..579,625..627,634..636) /gene="rnf183" /gene_synonym="zgc:153310" /note="cross-brace motif; other site" /db_xref="CDD:438111" ORIGIN
agcgaatggattgaggaagtcagaatgaagagcaggttgaacacatttcacatctttattggatgaacagcgggaaaaatgagcgaccccaaaacatcagggctcaactgatcttcagctcaggcatctctgcacagcacttccactttactgttaatcagctcctacacctctataatgggcgacgggagggagaaaccacagagcagcagaaaagggtctaacgccaagccgaagcttgatagcaaaggcagcttaaacctgggatcttcagagcagcgacagagggctgacaagcctgtcaggagaagccggagcaatgacacggagaaccggcggcgtgaagccagccgaggcagagaacgggaccggagagatgaaggaagaccacagcgggggcgcagcgaggaggggcggaggcgaggccacaaccatgagcctggaaacagagcctgggacaaagagcctcccaaagatgaactgcaagacacagagtgcatcgtatgcttctgcaacttcgacaacgtcttcaaaaccccaaagttactgtcttgtggacacacgttctgtctggaatgtctggctcggataaatgtaaactctccggagatcaaaactctgacttgtccaatttgcagagaggtgacagaaatccgacatggccgagaccttccacatttgttaaataatgaagccatttttcggcaacttccaagtgaaatgcaaagggcgctttctgtgcgcttcaagcgcagcaagggcaaactcgtcctcaagaatcctccaacaaacaactccattaagaccactttaaatctgccggtgtcaaagaagaaagaggagcaagctggaaataatgctattggagctatagaggaaggtctcggccaggcgactatgatcaacgtgggaaggcctccaaacaggatgaggggtcgcatgaggagggtaatgtactccagtcagtgctattacgccgtagtggcagtcattatctccatcactgtggctctaatgatggtgggtatcttcacctttgtggtgatgcctaacttgcaaagaccaattaccaagccattacagaaccaaactggaagcagtgcggttcaagctgactcttcgccttgagggatgaggaaactcaaaacgcttgggtaggatgacttgcatagcaaaacaagattcttggaagcttttgcattgtatccagcactgccctttttgtttgcttttgtctgagatgcttcaggcgggctcgataggaattaactggaaaaacttgaacgtgatgcacactgttgtttgttgagcacagatatatgcagacagttgttttaagagcaagagggaacaatgcaatgatgacatctactctgacctacaatgaattgtattgtaaaagtatgaatcaatgggtattgttttgttaaggctggaaaatgctgtactttattcttataaacgaactatatttttcatgtacctgaatgtgctactccactatggtttgcggtattaagatcgaaggataaaaatgtgacacctcatcaatgcaaaaaaatatgcttctaatactgtatgtaacaacgcaaatgtaagctcataaattttcttcctcatgttggaaaaacatttaatagatgcgtataagtctttgaattgtgttgcacatgatgtattttcatagttttttattcacatgcacaaacagagaaatgtcacaatgaaaagtggaaactaatatgcattttggtgcattttctgtttcagtgactttgaagtataatgcacacaaaaataaatgttcttccgtggctaaaaggaaaatgatacaaccagtaaaaaaaaaaaaaaaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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