2024-11-01 08:24:33, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_001045433 776 bp mRNA linear VRT 12-APR-2020 DEFINITION Danio rerio zgc:153322 (zgc:153322), mRNA. ACCESSION NM_001045433 VERSION NM_001045433.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 776) AUTHORS Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 COMMENT PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from BC122240.1. ##Evidence-Data-START## Transcript exon combination :: BC122240.1 [ECO:0000332] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..776 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" gene 1..776 /gene="zgc:153322" /note="zgc:153322" /db_xref="GeneID:751723" /db_xref="ZFIN:ZDB-GENE-060825-73" CDS 44..682 /gene="zgc:153322" /note="ribosomal protein S5-like" /codon_start=1 /product="uncharacterized protein LOC751723" /protein_id="NP_001038898.2" /db_xref="GeneID:751723" /db_xref="ZFIN:ZDB-GENE-060825-73" /translation="
MDDENWETDAVMVATAPAPAELPEVKLFGRWSCEDVQVSDMSLQDYIAVKENYAKFIPHSAGRYAAKRFRKAQCPIVERVTNSLMMHGRNNGKKLMAVRIMKHAMEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR"
misc_feature 119..679 /gene="zgc:153322" /note="Eukaryota homolog of Ribosomal Protein S7; Region: uS7_Eukaryote; cd14867" /db_xref="CDD:271246" misc_feature order(119..121,206..214,218..229,326..328,338..340) /gene="zgc:153322" /note="S9 interface [polypeptide binding]; other site" /db_xref="CDD:271246" misc_feature order(218..220,224..226,236..247,254..256,278..280, 287..289,293..307,317..331,338..340,458..466,470..472, 500..502,521..523,542..544,551..553,569..574) /gene="zgc:153322" /note="rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:271246" misc_feature order(350..352,359..364,371..373,569..571,575..580) /gene="zgc:153322" /note="S25 interface [polypeptide binding]; other site" /db_xref="CDD:271246" misc_feature order(455..457,464..466,470..472,677..679) /gene="zgc:153322" /note="S11 interface [polypeptide binding]; other site" /db_xref="CDD:271246" ORIGIN
gaaaaagaaaggaagaaaattaacttataatccggacttcaatatggatgatgaaaattgggaaactgatgctgttatggtagcaactgctcctgcacctgcagagttacctgaagttaaactttttggtcgctggtcctgtgaagatgtccaagtctcagatatgtctcttcaggattatatagcagttaaagagaattacgccaaatttatcccgcattctgctgggcgttatgctgccaaacgattcaggaaggctcagtgtcctattgttgaacgggtcaccaacagtctcatgatgcatggtcgtaataatggaaagaaattgatggctgtcagaattatgaaacatgctatggaaatcatccatcttcttactggcgagaatcctcttcaagttttggtgaacgccattattaactcgggtcctcgtgaagattccacccgtattggtcgtgctggcacagttcgtcgtcaagctgttgatgtttcccctcttcgtcgagtaaaccaggctatctggcttttatgtactggtgctcgcgaagctgcatttaggaatatcaaaacaattgccgagtgcttggctgacgaacttatcaatgctgctaagggatcgtccaactcctatgccattaagaaaaaggatgaactagaacgtgtggccaagagcaacagataaaacttcaagttgtcacttctgttttctgcctttcaataaaagatgaaagtagagttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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