LOCUS       NM_001013475            1087 bp    mRNA    linear   VRT 23-DEC-2022
DEFINITION  Danio rerio BRCA2 and CDKN1A interacting protein (bccip), mRNA.
ACCESSION   NM_001013475
VERSION     NM_001013475.2
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1087)
  AUTHORS   Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M,
            Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD,
            Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov
            GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and
            Hertzano R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1087)
  AUTHORS   Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, Nix R, Kelly
            PD, Chu F, Postlethwait JH and Talbot WS.
  TITLE     The zebrafish gene map defines ancestral vertebrate chromosomes
  JOURNAL   Genome Res 15 (9), 1307-1314 (2005)
   PUBMED   16109975
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            EH457160.1 and EH572117.1.
            
            On Feb 1, 2011 this sequence version replaced NM_001013475.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091454.1, EH485967.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA4476732, SAMEA4476771
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-917               EH457160.1         35-951
            918-1087            EH572117.1         1-170               c
FEATURES             Location/Qualifiers
     source          1..1087
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="12"
                     /map="12"
     gene            1..1087
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /note="BRCA2 and CDKN1A interacting protein"
                     /db_xref="GeneID:541348"
                     /db_xref="ZFIN:ZDB-GENE-050320-39"
     exon            1..194
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    54..56
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /note="upstream in-frame stop codon"
     CDS             63..968
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /codon_start=1
                     /product="protein BCCIP homolog"
                     /protein_id="NP_001013493.2"
                     /db_xref="GeneID:541348"
                     /db_xref="ZFIN:ZDB-GENE-050320-39"
                     /translation="

MASSAKRRAVETGQNPQDSDESSDEGLEDSGDDDSENSEEEVNEEVIVDFEAHTISDNDFHGIKTLLQQLFLKCHVNTSDLTDIIIQQNHIGSVIRQAEVPEDSDDEGDPDEVFGFISMVNLTERQGVECLEKLKDMILDQCVKCSTPDVQERMENLLQGNTQSVGLLLSERFVNVPPQIALPLHKQLQKEMAEAQRTNKPSGKCQFCLMISKTCKPLKKKSISAGDQAKDELLFVNDEEEFFYEQATVKFSYCVQDEADSCATGKWSYDDEPMKPFRTVMVIPMDRMDTIMQKMTDYLTV"

     misc_feature    63..191
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /note="propagated from UniProtKB/Swiss-Prot (Q5BJJ7.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    204..791
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /note="p21-C-terminal region-binding protein; Region:
                     BCIP; pfam13862"
                     /db_xref="CDD:433534"
     exon            195..269
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /inference="alignment:Splign:2.1.0"
     exon            270..350
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /inference="alignment:Splign:2.1.0"
     exon            351..440
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /inference="alignment:Splign:2.1.0"
     exon            441..628
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /inference="alignment:Splign:2.1.0"
     exon            629..797
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /inference="alignment:Splign:2.1.0"
     exon            798..1087
                     /gene="bccip"
                     /gene_synonym="mp:zf637-1-000774; zgc:110272"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gacgacacaaaacgtcgccgtgcgcgagctcgtgtctgtttcctgtacactagtgaagcagcatggcttcatctgccaaaaggcgtgctgttgaaactggacaaaatccacaagacagcgacgaaagctcggacgagggtctggaagactctggcgacgacgacagcgaaaattcagaagaagaagtaaacgaggaggttattgtggacttcgaagcacacacgatctctgacaacgactttcacggcatcaaaacccttcttcaacagctgtttctgaagtgtcacgtgaacacttctgacctcactgacatcatcatccagcagaaccacatcggcagtgtcatcaggcaagctgaagtaccggaggacagtgatgatgagggcgacccggacgaggtgtttggcttcatcagtatggtgaacctcaccgagagacagggtgtggagtgtctggagaagctgaaggacatgatactggatcagtgtgtgaagtgcagcactccggatgtgcaggagcggatggagaatctcctgcagggtaacactcagtctgtagggctcctgctgagcgagagattcgtcaacgtcccgccgcagatcgctctgcccctgcacaaacaactgcagaaggaaatggctgaagctcaaaggaccaataaacccagcggtaaatgccagttctgtctgatgatcagcaaaacatgcaagccattgaagaagaagagcatttctgcaggagaccaggctaaagacgagctgctgttcgtgaatgacgaggaggagttcttttatgagcaagcaacggtgaagttcagctactgtgttcaggatgaggcggactcgtgtgcgacagggaaatggtcgtacgatgacgagccaatgaagccgtttcgcacagtgatggtgatccccatggacagaatggacaccatcatgcagaaaatgactgattatctgaccgtctgaacacactttaaccttccaggccagtttgaccacaaatcacccaaaccagtgaaataatttattcattctgtacataatcagcccacaaaaataataataaacaacccaaacagattgac

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