LOCUS       NM_001003861             644 bp    mRNA    linear   VRT 16-APR-2023
DEFINITION  Danio rerio ribosomal protein L9 (rpl9), mRNA.
ACCESSION   NM_001003861 XM_679640
VERSION     NM_001003861.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Liang F, Zhang Y, Li L, Yang Y, Fei JF, Liu Y and Qin W.
  TITLE     SpG and SpRY variants expand the CRISPR toolbox for genome editing
            in zebrafish
  JOURNAL   Nat Commun 13 (1), 3421 (2022)
   PUBMED   35701400
  REMARK    Erratum:[Nat Commun. 2023 Feb 16;14(1):879. PMID: 36797310]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 644)
  AUTHORS   Liu Y, Liang F, Dong Z, Li S, Ye J and Qin W.
  TITLE     Genome Editing in Zebrafish by ScCas9 Recognizing NNG PAM
  JOURNAL   Cells 10 (8), 2099 (2021)
   PUBMED   34440868
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 644)
  AUTHORS   Fernandez JP, Moreno-Mateos MA, Gohr A, Miao L, Chan SH, Irimia M
            and Giraldez AJ.
  TITLE     RES complex is associated with intron definition and required for
            zebrafish early embryogenesis
  JOURNAL   PLoS Genet 14 (7), e1007473 (2018)
   PUBMED   29969449
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 644)
  AUTHORS   Bayes A, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A,
            Choudhary JS, Emes RD and Grant SG.
  TITLE     Evolution of complexity in the zebrafish synapse proteome
  JOURNAL   Nat Commun 8, 14613 (2017)
   PUBMED   28252024
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 644)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 644)
  AUTHORS   Hoshijima K and Hirose S.
  TITLE     Expression of endocrine genes in zebrafish larvae in response to
            environmental salinity
  JOURNAL   J Endocrinol 193 (3), 481-491 (2007)
   PUBMED   17535885
REFERENCE   7  (bases 1 to 644)
  AUTHORS   Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, Nix R, Kelly
            PD, Chu F, Postlethwait JH and Talbot WS.
  TITLE     The zebrafish gene map defines ancestral vertebrate chromosomes
  JOURNAL   Genome Res 15 (9), 1307-1314 (2005)
   PUBMED   16109975
REFERENCE   8  (bases 1 to 644)
  AUTHORS   Amsterdam A, Nissen RM, Sun Z, Swindell EC, Farrington S and
            Hopkins N.
  TITLE     Identification of 315 genes essential for early zebrafish
            development
  JOURNAL   Proc Natl Acad Sci U S A 101 (35), 12792-12797 (2004)
   PUBMED   15256591
REFERENCE   9  (bases 1 to 644)
  AUTHORS   Linney E, Dobbs-McAuliffe B, Sajadi H and Malek RL.
  TITLE     Microarray gene expression profiling during the segmentation phase
            of zebrafish development
  JOURNAL   Comp Biochem Physiol C Toxicol Pharmacol 138 (3), 351-362 (2004)
   PUBMED   15533793
REFERENCE   10 (bases 1 to 644)
  AUTHORS   Takezaki N, Figueroa F, Zaleska-Rutczynska Z and Klein J.
  TITLE     Molecular phylogeny of early vertebrates: monophyly of the
            agnathans as revealed by sequences of 35 genes
  JOURNAL   Mol Biol Evol 20 (2), 287-292 (2003)
   PUBMED   12598696
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY648736.1.
            
            On Dec 22, 2007 this sequence version replaced XM_679640.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY648736.1, CN512882.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA3505377, SAMEA4476728
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="1"
                     /map="1"
     gene            1..644
                     /gene="rpl9"
                     /gene_synonym="ab02c03; fa93a01; mg:ab02c03; wu:fa93a01;
                     zgc:103730"
                     /note="ribosomal protein L9"
                     /db_xref="GeneID:336702"
                     /db_xref="ZFIN:ZDB-GENE-030131-8646"
     CDS             1..582
                     /gene="rpl9"
                     /gene_synonym="ab02c03; fa93a01; mg:ab02c03; wu:fa93a01;
                     zgc:103730"
                     /codon_start=1
                     /product="60S ribosomal protein L9"
                     /protein_id="NP_001003861.1"
                     /db_xref="GeneID:336702"
                     /db_xref="ZFIN:ZDB-GENE-030131-8646"
                     /translation="

MKTILSNQTVDIPDNVTVSLKGRTVTVKGPRGVLRREFNHINLELSLLGKKQKKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQESGSLVEIRNFLGEKYIRRVRMRQGVACAVSAAQKDELVLEGNDIELVSNSAALIQQATTVRKKDIRKFLDGIYVSEKGTVVEQQED"

     misc_feature    1..567
                     /gene="rpl9"
                     /gene_synonym="ab02c03; fa93a01; mg:ab02c03; wu:fa93a01;
                     zgc:103730"
                     /note="60S ribosomal protein L6; Provisional; Region:
                     PTZ00027"
                     /db_xref="CDD:240234"
     exon            1..46
                     /gene="rpl9"
                     /gene_synonym="ab02c03; fa93a01; mg:ab02c03; wu:fa93a01;
                     zgc:103730"
                     /inference="alignment:Splign:2.1.0"
     exon            47..162
                     /gene="rpl9"
                     /gene_synonym="ab02c03; fa93a01; mg:ab02c03; wu:fa93a01;
                     zgc:103730"
                     /inference="alignment:Splign:2.1.0"
     exon            163..258
                     /gene="rpl9"
                     /gene_synonym="ab02c03; fa93a01; mg:ab02c03; wu:fa93a01;
                     zgc:103730"
                     /inference="alignment:Splign:2.1.0"
     exon            259..391
                     /gene="rpl9"
                     /gene_synonym="ab02c03; fa93a01; mg:ab02c03; wu:fa93a01;
                     zgc:103730"
                     /inference="alignment:Splign:2.1.0"
     exon            392..472
                     /gene="rpl9"
                     /gene_synonym="ab02c03; fa93a01; mg:ab02c03; wu:fa93a01;
                     zgc:103730"
                     /inference="alignment:Splign:2.1.0"
     exon            473..634
                     /gene="rpl9"
                     /gene_synonym="ab02c03; fa93a01; mg:ab02c03; wu:fa93a01;
                     zgc:103730"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

atgaagaccattctcagtaaccagacagtggacatccctgacaatgtcacggtgtccctcaagggccgcacagttaccgtgaagggaccccgtggtgttctccgccgggagttcaaccacattaacctggaactcagtctgttgggcaagaaacagaaaaagctgcgtgtggataagtggtggggtaaccgaaaggagttggccaccgtccgcaccatctgcagtcatgtccagaacatgatcaagggtgtcaccctgggcttcaggtacaaaatgcgatctgtatatgcccattttcccattaatgtggtcatccaagagtctggctctctggtggagatcagaaacttcttgggagagaagtacattcgccgtgtccgcatgaggcaaggagttgcatgtgcagtgtctgctgctcaaaaagacgagttggttctggagggtaatgatattgagctggtgtcaaactcagctgctctgatccagcaggccaccactgtgaggaagaaggacatccggaagttcctggatgggatttatgtcagcgagaagggcacagtggtggaacagcaagaggactaaattagtctctgtaaaatctgtcaataaagaccaactccatttttcaatcataaaaaaaaaaa

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