2024-11-01 09:05:42, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_057957 3467 bp mRNA linear INV 26-DEC-2023 DEFINITION Drosophila melanogaster visceral mesodermal armadillo-repeats (vimar), transcript variant B, mRNA. ACCESSION NM_057957 VERSION NM_057957.5 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3467) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3467) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3467) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3467) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3467) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3467) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3467) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3467) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3467) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3467) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3467) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3467) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3467) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3467) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3467) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3467) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3467) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3467) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3467) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3467) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-OCT-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 21 (bases 1 to 3467) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3467) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 23 (bases 1 to 3467) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 24 (bases 1 to 3467) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_033778). On Jan 16, 2013 this sequence version replaced NM_057957.4. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3467 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="2R" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3467 /gene="vimar" /locus_tag="Dmel_CG3572" /gene_synonym="anon-EST:Posey213; CG3572; Dmel\CG3572; l(2)k16722; Vimar" /note="visceral mesodermal armadillo-repeats" /map="42E1-42E1" /db_xref="FLYBASE:FBgn0022960" /db_xref="GeneID:35609" CDS 295..2199 /gene="vimar" /locus_tag="Dmel_CG3572" /gene_synonym="anon-EST:Posey213; CG3572; Dmel\CG3572; l(2)k16722; Vimar" /note="CG3572 gene product from transcript CG3572-RB; CG3572-PB; vimar-PB; visceral mesoderm armadillo repeats; visceral mesodermal armadillo repeats; visceral mesodermal armadillo-repeats" /codon_start=1 /product="visceral mesodermal armadillo-repeats, isoform B" /protein_id="NP_477305.1" /db_xref="FLYBASE:FBpp0089175" /db_xref="GeneID:35609" /db_xref="FLYBASE:FBgn0022960" /translation="
MATEIDDLIEKLKTTSVSPANTTNLLCEISATKDPKLFDKHELAECFLGLTKCDDTNVRKEAAKCIAEITKSEVQRKKFTKRNIIAAFLECLRQVPTSDGSMELPIQICRALGNICYLNDEARDLILELEGDAVLLRLLDITTIEDVANAAQFIKVRGGLLSNYLLGGEGLAKRAMELGVMKKLQGIIDIGASNVEQHEDLLLNTLPLLSILTENVSDLNFDSSLNIQLSRILAASTNPDLAEMCLELLHYQAESDEVKLILAKDGLCETIYNLLEKYKTLASTSEARALMKLACELIVLILTGDDSMHYLYTTPLLKNMVDWLDSTDIDLLTTGVLALGNFARTDSHCIYFVEQQTMNKLLEVLAKNNGVKDDVRLQHALLSALRNLVIPKPNKNAVIQAGLVQTILPMLEIHQPPVVFKLLGTLRMTVDGQEKLALELLKNKTLIEQLVHWSKSSDYAGVTGESLRLMAWLIKHAYLSKIAYALPRKGDAPAEQIADKIPLTQDYDRSSLSEFLANEGTVEAMVSMLTAQHLVMQNEALIALCILSVVYLSQPSEAAQAQLLQDELVKCEVGKKLAELISKSSDTMTKEIVENLQNCVNLLKSSEQLVAHLEQHNINELLKSIPILTEYCTL"
misc_feature order(472..474,484..486,496..498,610..612,622..624, 634..636,736..738,769..771,781..783) /gene="vimar" /locus_tag="Dmel_CG3572" /gene_synonym="anon-EST:Posey213; CG3572; Dmel\CG3572; l(2)k16722; Vimar" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293788" misc_feature 520..645 /gene="vimar" /locus_tag="Dmel_CG3572" /gene_synonym="anon-EST:Posey213; CG3572; Dmel\CG3572; l(2)k16722; Vimar" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 661..786 /gene="vimar" /locus_tag="Dmel_CG3572" /gene_synonym="anon-EST:Posey213; CG3572; Dmel\CG3572; l(2)k16722; Vimar" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1243..1320 /gene="vimar" /locus_tag="Dmel_CG3572" /gene_synonym="anon-EST:Posey213; CG3572; Dmel\CG3572; l(2)k16722; Vimar" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature order(1291..1293,1303..1305,1315..1317,1429..1431, 1441..1443,1453..1455,1552..1554,1564..1566) /gene="vimar" /locus_tag="Dmel_CG3572" /gene_synonym="anon-EST:Posey213; CG3572; Dmel\CG3572; l(2)k16722; Vimar" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293788" misc_feature 1342..1464 /gene="vimar" /locus_tag="Dmel_CG3572" /gene_synonym="anon-EST:Posey213; CG3572; Dmel\CG3572; l(2)k16722; Vimar" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" misc_feature 1477..1575 /gene="vimar" /locus_tag="Dmel_CG3572" /gene_synonym="anon-EST:Posey213; CG3572; Dmel\CG3572; l(2)k16722; Vimar" /note="armadillo repeat [structural motif]; Region: armadillo repeat" /db_xref="CDD:293788" ORIGIN
gtcacactagaattgcagttgttggtgtgaacgtctgaacgcgattcggaaaatacggattacacggataatacgaattatacggatattgcggaagttgaacggagacgcgactgaaagaaagccgtgaaatgtgttcagttgcgcgcagcagtcattagcctatcagcagtgtttgttacaagctaacagtgatacaacgtgcctggaatcgcaaccaacgcagagcaagaaaagcagaaaagcataaaaacggaagaagcagcagcggaataatcaacaaaggcggcaaacatggcgactgaaatcgacgatttgattgaaaagctgaagacgaccagtgtcagtccggcgaacacgaccaacttgctctgcgagatctcggcgacgaaggaccccaaacttttcgataagcacgagctggcagagtgctttctgggcctcaccaagtgcgacgacacaaacgtgcgcaaggaggcggccaagtgcattgcggagatcaccaagtccgaggtgcagcgcaagaagttcaccaagaggaatataatagccgcatttctggagtgcttgcgacaagtgcccacgtccgacggcagtatggagctgcccatacagatttgtcgggcactgggcaatatctgctacctaaacgacgaagccagggacttaatactcgagctggagggcgatgctgttctactgcgactgctggacatcacaaccatcgaggacgtggccaatgcggcgcaattcatcaaagtgcgcggcggcttgctgtccaactatttgctcggaggcgagggcttggccaagcgggccatggagttgggcgtgatgaagaagctgcaaggcatcatcgacattggcgcctccaatgtggaacagcatgaggatctgctgctgaacacgcttccactgctcagtatactcaccgagaacgtgtcggatctgaacttcgactcttccctgaatatccagctgtctcgcattctggccgcttccacgaatcccgatcttgccgagatgtgcctggagctgctccattaccaggcggagagcgacgaagtcaagcttattttggccaaggacggtctgtgcgaaaccatctacaacctgctggaaaagtacaagactctggccagcacaagtgaggccagggcgttgatgaaactcgcctgcgaactcatcgtattaatccttactggtgatgactcaatgcactatttgtacaccacgccgctgctgaagaacatggtcgattggctggactcgacggacatcgatctgctaaccaccggcgtgctggccctgggcaactttgcgcgcaccgatagccactgcatctactttgtggagcagcagaccatgaacaagctgctcgaggtgctggccaagaacaacggcgtcaaggacgatgtgcgcctgcagcacgctcttctctccgcgctgcgcaacctggtcatcccgaagccaaacaagaacgcggtaatccaggcgggcctggtgcagaccattcttcccatgctcgaaatacaccagccaccagtcgtcttcaagctgctgggcacacttcgcatgaccgtcgacggacaggagaaactcgcactggagttgctgaagaacaagactctgatcgagcagctggtgcactggagcaaatcgtcggactatgcgggcgtcaccggcgagtctctgcgcctcatggcctggctgatcaagcacgcctacctcagcaaaatcgcatacgcactgccgcgcaagggcgatgcacccgccgaacagattgccgacaagattccgctaacgcaagactacgatcgcagtagcttgagcgagttccttgccaacgagggcaccgtggaggccatggtcagcatgctcacagctcagcacctggtcatgcagaacgaggcgctgattgccctgtgcatcctgtccgtggtgtacctgtcgcagcccagcgaggcggcgcaggcccagctgctgcaggacgagctggtcaagtgcgaggtcggcaagaagttggccgagctcatcagcaagtcgtcggacacgatgaccaaggagattgtcgagaacctgcagaactgcgtgaacttgctcaaatcttccgagcagctggtggcgcatctggaacagcataacatcaacgagctgctgaagtctatacccattctcaccgaatactgcaccttgtaagaaaacggggactgtcattgcatttatcccagcaccgcaggatgcctcacagtgggatgggtcgatttgcacgattgaacataacataaatactttaggggtaagcagttatctttggaagttatctgtgtggtcttaccaagagaaacgccaatacttattcgtaacgatacaaagattaatacgttgcgctaatgtgctaaactccactttactacttaataacaattttgttaaattgtaattaaatccactctcttgagattcactgacgttgcacgattccaaatagccaaagataaatgtttgccactattagagcatgttttaaaaaaaatcagcccacccttagccacacagacacactcagaaccggagaaaatagtagttttcaccccaaagcaacgattcagatgtagacttgactgtagtttggtaagaagaaagtgcagattcacaagttaagcagttaatcagttaagcacactggaacacgcgaacacgagaggagcagaaagtattttttagacgcaagcgtattttgactgcatttatgaagagaatccgatgtagtaaggagtcacaaatcgtatgaatatttatagcatacatacataacatatacgtataaatataataatattaataatttagcatattaatcttttctgttacatgatttttaagagcacaataacaacaaatcgtggtgatatcgctaaatatatttaataaatgtattttatgattgtacttataattttcaatcgacctcttttaaaccgttgctggcacaaaccaaaaacgagaagataacaaaacatttagacgcacgacgtaattaaggtattttaattggtgcacagacacatattgcaaacggcatcccatatatttattgtaaaactcggcgaagttatccaaaatgcatttttaagctaactttaaaacattaacaaaactgcaactcagtaacaatcagcaatccgaaaatagttgaaaaccaataatgcaaatatttcaattttacaaatcgtagtttatggagtgctacaaattttaccaattattaaaaacgatgtactaatgtttggtcaccaaaaactaaaaattaaacgaacacaattcaaggggaatggtgttaatatataaagcgttgagacacccacacacataaatgcgaaaacatatttatgaactctaaacacaataatgtacatttaataattcaaataaaatttgaaatgcatgagaaataagagaaaacc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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